G2200687


Basic Information

Item Value
gene id G2200687
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 12428887 ~ 12429318 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2517970
ggatcgatttggaggtggagggtctcggactgagcttgttgtcattgcaggcaatctcaacgctgtgcgttacagggaagacatcctcctccctcatgtggtacccttcctgcaggctcatcctgacatgaccctccagcatgacaatgccaccagccatactgcccgttctgtgcatgatttcctgcaagacaggaatgtcagtgttctgccatggccagcaaagagcccggatctcaatcccattgagcacgtctgggacctgttggatcggagggtgagggctagggccattcccctcagaaatgtctttggtggaagagtggggtaacatctcacagcaagaactggaaaatctggtgcagtccatgaggaggagatgcactgcagtatttaatgcagctggtggccacaccagatactgactgatac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2517970 True 432 lncRNA 0.53 1 12428887 12429318

Neighbor

gene id symbol gene type direction distance location
LOC110521334 LOC106584563 coding upstream 5309 12415118 ~ 12423578 (+)
pot1 pot1 coding upstream 27084 12353037 ~ 12401803 (+)
grm8b grm8 coding upstream 119238 12114133 ~ 12309649 (+)
LOC110522739 LOC106584566 coding upstream 337069 12087010 ~ 12091818 (+)
LOC110521328 LOC106584569 coding upstream 343951 12080362 ~ 12084936 (+)
LOC110521338 LOC105018628 coding downstream 98294 12527612 ~ 12545633 (+)
slc13a1 slc13a1 coding downstream 157655 12586973 ~ 12609390 (+)
cadps2 cadps2 coding downstream 193016 12622334 ~ 12890397 (+)
LOC110521342 LOC106584552 coding downstream 464002 12893320 ~ 12896797 (+)
aass LOC100136272 coding downstream 476831 12906149 ~ 12921316 (+)
G2200626 NA non-coding upstream 109821 12318851 ~ 12319066 (+)
G2200625 NA non-coding upstream 110041 12318632 ~ 12318846 (+)
G2200618 NA non-coding upstream 118951 12309694 ~ 12309936 (+)
G2200616 NA non-coding upstream 124024 12304203 ~ 12304863 (+)
G2200592 NA non-coding upstream 168217 12260313 ~ 12260670 (+)
G2200694 NA non-coding downstream 9001 12438319 ~ 12438552 (+)
G2200696 NA non-coding downstream 10994 12440312 ~ 12440539 (+)
G2200708 NA non-coding downstream 34904 12464222 ~ 12464537 (+)
G2200675 LOC106584561 non-coding downstream 39239 12468557 ~ 12469544 (+)
G2200718 NA non-coding downstream 58542 12487860 ~ 12488061 (+)
LOC110521323 LOC106561036 other upstream 631952 11683849 ~ 11796935 (+)
G2198837 NA other upstream 1284215 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 1551098 10799756 ~ 10920504 (+)
G2198247 NA other upstream 2204770 10221650 ~ 10224117 (+)
G2197955 NA other upstream 2808600 9619867 ~ 9620287 (+)
G2202196 NA other downstream 771820 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 862918 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 1006490 13435735 ~ 13462187 (+)
G2203653 NA other downstream 2130129 14559447 ~ 14567103 (+)
G2203973 NA other downstream 2842727 15272045 ~ 15273733 (+)

Expression


Co-expression Network