G2200675 (LOC106584561)


Basic Information

Item Value
gene id G2200675
gene name LOC106584561
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 12468557 ~ 12469544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2517958
GGTGAGGAAGGCCATTGCCTCGTCTCTGTAGCCCAGGCGTGTGTACACGAATGTGGGCAGATCATAGCTGTGTGAGGTGAGCCCAGCTATCCTCAGAGATTCCAGCACCCTAAACTGGGAGAAATGGAGATTGCTGACACTGTCTGTTTGGCTCTTCCTGATAGCCACTGAGGGAAACAGTGCTGTGCTGCTGTTCCACAACCAGAGCAGTTCGTCATTACGCAGGCTCTCCAGCAGAGGGCAGGAGCCTGTGTAGTTGTGCTCATACAGGTTGTAGTTGTGGCAGTCCGGATAGAGGTAGAAGCCCCAGAGTCCGTTGGGGCGAAGGAACGTCCCTAGCTGGACAGTCTTCTGCATGAACGCACGGGCACTCTTCTCAAAGCGTTTGCTCGCCAGCTCTTCGATTTGTGATGAAGTCACATTAACATATGCCTGTGTGATCAGCTCCCGGGACTTCCGCCGGTAAATGTCTTTCTTGTGCCAGTTGCGGTTCCACTGTGGGCGCCAGTACTCCCAGTCAATGACCGCCAGACCGGCAAAGTCCTCCGAGGGGATAAAATGGTTGATATCCCTGTAGGCCTTGAGGAGATGGTCATTCATGTTGCAGTTTTGGGGCAGGCCTCCATTGATAGGGATGCTGTGGTCCGTGTAGAAAGGGTAGAGGCCTAGCCGGTTGGCATAGAAAATGGTAACGTTCTGGCCAGTGTGGACGGCCCGCGGACTGCCACTAATGTGGAAGAGGTGCTCCAGGTTGGTGTGGACATTGTACTTGACAGTGCAGAGGTCCAGCGGTGCGTTCCAGGCAGCGATGAAGGGCTTGCGGCCCACCAGGGGCAGTTTGGCAGGCTTCTGGCTGAAGGCGGCATGAAAGAATAGCAGGAGCCAGGAACAGGTGAGGGCGCAGGCCACAGGCACGGCGTGGTGAGGTTGGCCACTTCCAACGGGCACCATGAGCATCCTGGAGCTTGGGTCAATGGGAAGGGCTGTC

Function

NR:

description
hyaluronidase-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2517958 True 988 lncRNA 0.56 1 12468557 12469544

Neighbor

gene id symbol gene type direction distance location
LOC110521334 LOC106584563 coding upstream 44979 12415118 ~ 12423578 (+)
pot1 pot1 coding upstream 66754 12353037 ~ 12401803 (+)
grm8b grm8 coding upstream 158908 12114133 ~ 12309649 (+)
LOC110522739 LOC106584566 coding upstream 376739 12087010 ~ 12091818 (+)
LOC110521328 LOC106584569 coding upstream 383621 12080362 ~ 12084936 (+)
LOC110521338 LOC105018628 coding downstream 58068 12527612 ~ 12545633 (+)
slc13a1 slc13a1 coding downstream 117429 12586973 ~ 12609390 (+)
cadps2 cadps2 coding downstream 152790 12622334 ~ 12890397 (+)
LOC110521342 LOC106584552 coding downstream 423776 12893320 ~ 12896797 (+)
aass LOC100136272 coding downstream 436605 12906149 ~ 12921316 (+)
G2200708 NA non-coding upstream 4020 12464222 ~ 12464537 (+)
G2200696 NA non-coding upstream 28018 12440312 ~ 12440539 (+)
G2200694 NA non-coding upstream 30005 12438319 ~ 12438552 (+)
G2200687 NA non-coding upstream 39239 12428887 ~ 12429318 (+)
G2200626 NA non-coding upstream 149491 12318851 ~ 12319066 (+)
G2200718 NA non-coding downstream 18316 12487860 ~ 12488061 (+)
G2200727 NA non-coding downstream 35341 12504885 ~ 12505262 (+)
G2200728 NA non-coding downstream 37184 12506728 ~ 12507019 (+)
G2200737 NA non-coding downstream 50132 12519676 ~ 12520269 (+)
G2200739 NA non-coding downstream 52438 12521982 ~ 12522317 (+)
LOC110521323 LOC106561036 other upstream 671622 11683849 ~ 11796935 (+)
G2198837 NA other upstream 1323885 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 1590768 10799756 ~ 10920504 (+)
G2198247 NA other upstream 2244440 10221650 ~ 10224117 (+)
G2197955 NA other upstream 2848270 9619867 ~ 9620287 (+)
G2202196 NA other downstream 731594 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 822692 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 966264 13435735 ~ 13462187 (+)
G2203653 NA other downstream 2089903 14559447 ~ 14567103 (+)
G2203973 NA other downstream 2802501 15272045 ~ 15273733 (+)

Expression


Co-expression Network