G2200965


Basic Information

Item Value
gene id G2200965
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 12902137 ~ 12902472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2518286
atagtggtcctggatggcaggcaacttagccccagtgatgtactgggccgttcgcactaccctctgtagtgccttgcggtcggaggccgagcagttgtcataccaggcagtgatgcaaccagtcaggatgctctcgatggtgcagctgtagaaccttttgaggatctgaagacccatgccaaatctttttagtgtcctgagggggaataggctttgtcgtgccctcttcacgactgtcttggtgtgcttggaccatgttagtttgttggtgatgtggacaccaaggaacttgaagctctcaacctgctccactacagccccgacgatgagaatggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2518286 True 336 lncRNA 0.53 1 12902137 12902472

Neighbor

gene id symbol gene type direction distance location
LOC110521342 LOC106584552 coding upstream 5340 12893320 ~ 12896797 (+)
cadps2 cadps2 coding upstream 11740 12622334 ~ 12890397 (+)
slc13a1 slc13a1 coding upstream 292747 12586973 ~ 12609390 (+)
LOC110521338 LOC105018628 coding upstream 356504 12527612 ~ 12545633 (+)
LOC110521334 LOC106584563 coding upstream 478559 12415118 ~ 12423578 (+)
aass LOC100136272 coding downstream 3677 12906149 ~ 12921316 (+)
LOC110521345 LOC106584548 coding downstream 154558 13057030 ~ 13073884 (+)
bet1l bet1l coding downstream 209235 13111707 ~ 13114914 (+)
deaf1 LOC106584542 coding downstream 215095 13117567 ~ 13148519 (+)
cdhr5b LOC106584514 coding downstream 334497 13236969 ~ 13250964 (+)
G2200961 NA non-coding upstream 4309 12897553 ~ 12897828 (+)
G2200879 NA non-coding upstream 143017 12758825 ~ 12759120 (+)
G2200875 NA non-coding upstream 148941 12752681 ~ 12753196 (+)
G2200873 NA non-coding upstream 156248 12743808 ~ 12745889 (+)
G2200760 NA non-coding upstream 324349 12577435 ~ 12577788 (+)
G2200967 NA non-coding downstream 871 12903343 ~ 12903560 (+)
G2202043 NA non-coding downstream 151295 13053767 ~ 13053972 (+)
G2202046 NA non-coding downstream 153249 13055721 ~ 13055936 (+)
G2202066 NA non-coding downstream 186687 13089159 ~ 13089377 (+)
G2202085 NA non-coding downstream 204965 13107437 ~ 13107769 (+)
LOC110521323 LOC106561036 other upstream 1105202 11683849 ~ 11796935 (+)
G2198837 NA other upstream 1757465 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 2024348 10799756 ~ 10920504 (+)
G2198247 NA other upstream 2678020 10221650 ~ 10224117 (+)
G2197955 NA other upstream 3281850 9619867 ~ 9620287 (+)
G2202196 NA other downstream 298666 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 389764 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 533336 13435735 ~ 13462187 (+)
G2203653 NA other downstream 1656975 14559447 ~ 14567103 (+)
G2203973 NA other downstream 2369573 15272045 ~ 15273733 (+)

Expression


Co-expression Network