G2202420 (LOC106584515)


Basic Information

Item Value
gene id G2202420
gene name LOC106584515
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13297881 ~ 13301748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2519885
ATGCGTAGCTTCACATATTCTGGTTTCATACACAGTTCAGTCAAAACATTCTGGGCCATCATACAGCTCACCTGAGAACACGTTTTAAAACCAAAGTTGAGAGACGACCCAAAGACACCATCACAAGGGTCAAATAAACCTTCTATAACCGTTTATTTTTAAATATAGTATATTCACCATGAAAATGTTAAAACATCCGTCTATGGCCTAAATTGTATGGCGTGCAGAAGTGCACAAAATGTTGAATCATCACATCTAGGGTTTAAAAactcccaggttttccagaaatcccagttggtAGATTCCAGGAATCAGGTGGAAATACACAGAAAATCCTGAATCCTCCAAAAAGGATTTCTGGAAcacctgggaattttgggaaagttaggGTCATTCTGTAACCCTGATCACATCATGGATGAATGGTCACAGCCACATTTCGCATAGTACATAAGACTGTGCACTCACTGACCACCAAAACATGTTACAGCAATAACCAATTCACATAACTGTATTCTTTCATAAGATCCTTACGTCGTGTATtccaattaaaaacattgacagcaTCAATAGGCAACATTTTAAAGTAGAAAAATGTTTATCAACGCCCAACAACTGCATACAAAGTGTGCAAGTGTCACTGTACAGTCGCACAAGACAAATTCAAGCAAAGGCACCATACTCATGTACTGAAGCTTCCATTCCACCCATACTGGTCACAGAACAACAAACATGTACTACAACCACTGCTGACAAAAATAAGCATTTCTAATATTAAGTCTGTCAGATAAAAGTGGTTTATGATCATAATCATACTACAATAACATTGGATCAGTGGCATTTTATGAATATGATAAGTTACTTTAGCAAGCCatcttttttttatatttttttacagaaatgtaaCTATTTTATAAATCATATGAGCCTCTACACAACTCCCTGGATATAAAGTTTTGCTTTCCAATGTTATGTTAATTTGAGTTGATTTTGCAATTCAGACAGTTCTAAAGATGGGCAACATTCAACCCTTGTGTTGAGGTAGAGAATGCTAACATTTAGCCTGTTGTGGCTGAAGCAAAATAATGAAACCCTAATCCTAGACGTAGTCACTACTGGTCTATTACTTCCAAGATAAGTCAAATAATTGAAATATTACTTTTGAACAAACTGTCCCTTTAAGGGAAAAATATTGGGACCAAATTAACTGAATCGAACACTAGAGCACAAAGTCTTCAAAACAATCATTGTAAAAATACATTTCCATACCACAGAACAATGACAATAAAAAAGTTAACTGGTGTTTAGATTCATGTCAGCTTTCTAATACCCATCAAACTGTGCATTTCTGGAGAACCTTTTTAGGTAGTGCAATAGAATTTCCCGTAGTACAACACTGAATCACCATTCAGTCTGATTTTTAATATACTAATACTGACATTCCAGAGAGATAGATACTGACCATCCATTTTCATTGCATACACAACAGCTGAAATTACAAAGCCACAGTTTCCAAGAAGTAGCACAGCAAATGTTTACAACGGTGAGTTAAAGTGATAGGGAACGTCATGTAAGTTAGTTTTCCTCATAGAGGATGATCTATGATAAATCATTGTCTTCCACCTGGTCTTCTGAACCATGATGGAAAATGTCTTGAGGAGGCTACCACATTGTTATGTCTGTCTGTGGCAGGAGGGTCACAGACCAATTGAGGTGTGAGGGAGGgatttacaacaacaacaaatcggAATCTATGTGCAAAGTCCCCTGCATGTCGCTGATATAGTACAGTAATGATCTGCTCCTGTGGTTGGCCGATGTAGATCCAGGAGAGCAGTGGCATCCTCCATTATTCACACAGAGCTTTCAGATTAGATCAGCAGTGTTTGCAGCTATATTGGAATGACATCATCATTAGTTCTCCTGAGAACTCCCATTCAAATTCCCCTGAAATAAAAACACAACCACAATAAAACCAAGGTAGCACAGGGCTTATTCAGCCTGAAGTCACTGTCTAGAATGAAACAGTTTCCATATCTAGCAGATGTAAAGAGTAAAACATCTAATCGCTTATGGAGAAACATCACAAAGTCAAATTCACAGGCTCAGAAGAGGACAAATACATCAACTTGCATTTACATTTTCACAAGAATTTTGATGTGTTGCAAGTACATTGAGCTTCAAAAGTATTGGGACTGACATTTGTCGtggttttggctctgtactccagcactttggatttgaaatgagaCGATGGAGGTTAAAGttcagactgtcagctttcatttgagggtattttcatccatatctggTGAACCGTTAAGAAGGTATGTGCAAAAAGTGCTGTactaaaagtattgggacaaattcacttatatttgCATTAAACtggtcaaaagtttagtatttggtcccatattcctagcacgcaaagattacatcaagcttgtgagaCTCTACGAACTTGTTAGAGGCATTTGCTTTGGtggtgtttcagattattttgtgctcaatagaaatgaatggtaaataatgtgtaGTGTCACTTTTATtgcaaataagaatagaatatggtttctaaacacttctacaatGGTTCACCAGATATGGATGAAAACACCCTaaaatgaaagctgacagtctgacactttaacctcagtcatcgtatcatttcaaatccaaaaggCTGAAGTAGAGCCAAAACATTAAAAAactgtgtcactgtcccaatacttttgaagCTCACTGTTAGTGGCAACATCTCCATATCCAGTTGACTATGACAGAAAGTAAAGCTGCCTTTCAAAAATTGTCCATAGAAAAATATCCATTGAATGCCACGGTTAGATTAGAAAAATAAAGAGGGCCAAACTACAGGGaaaggggagtggagggggaggagccAGGTCAGGTCCAGGCCACTTTCCTTGAGATAGCCTGCTTGAAGCACTCTGGGTCCACGTTGCCTCCAGGCCGCAGAGCTCTCTCCAGGCTCACCAGCACATTCTGGTGACACTCCCTGATGTTAACGGGGTACTTGGCCCTCAGCAGCTCGTAGGCCGAGATCAGCCGCATATTCTGCTTCACCATGAGGTACTGGATGATACAGGTCGGAGCCAGGGAGTACCCGTCACGGCAGTGGACCAGCACTCGTTTCCTTTTTTCCGTGGAAGCCTCGATGCACTCGTTGATGTCCTCGAAGCAGTGCTGCTTCAGGGCGGGGCTTCCCTCGCCCAGTGCGTCTGGGACATCACAGATGTCCACCTTGAGGCGGGACCAGCTGTGGCGGGCTCCTCGGGAGCAGGTGCAGGGGATAAGGCTGAGACTTGGGCCGGAGTCCCCTGGCATGCTGCTCATGTCGATGATGCTGTCAATGTTGTTGCGACACAGCGTGCGCCCGTTGTACGCTGCGTTCAGGTTGCCCACGAAGATGTAGTCCGTGACCTTGGAGATGACGGGCTCAGAGTACTGGAAGTGTTCCGGGACGTTCAGTTTGGGCGTGTCTGGGGTGTCTGGTGGACCCGCCCTGCCCACTGACCCCACCCCGGCCGGACCTGTGGCAGCTCTCATGCTGTAGTTACGCAGCTTCTTGGAGCCGGAGCGGGAGGGGGGGTTGGAATCGGACTCTGAGCTACTGTTCCAGGGAGGGGAAAATAGGGAGAAGCGGCTGGAGGACTTGCTCTTGGTGAGGTTCTCCACAGGGCTGGATAGGCCAGAGCTGGAGGCTGTGGTGGAACCAGAGGCACAAAACAATGAGGCCCTCTCCAGGGAGCCTGTGCTGCTGGCTGCTCCTGCACAGTGGGC

Function

NR:

description
uncharacterized protein LOC110521355

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2519885 True 3804 lncRNA 0.43 2 13297881 13301748

Neighbor

gene id symbol gene type direction distance location
LOC110521353 LOC106584518 coding downstream 27760 13267984 ~ 13270121 (-)
drd4a LOC106584511 coding downstream 111176 13159502 ~ 13186705 (-)
ticam1 LOC106584543 coding downstream 179183 13108364 ~ 13118698 (-)
LOC110521347 LOC106584546 coding downstream 194336 13094306 ~ 13103545 (-)
LOC110521346 LOC106584547 coding downstream 210297 13078925 ~ 13087584 (-)
prr33 LOC106584523 coding upstream 124903 13426651 ~ 13435077 (-)
myod2 myod2 coding upstream 157586 13459334 ~ 13461444 (-)
LOC110521367 LOC106584527 coding upstream 160842 13462590 ~ 13474314 (-)
LOC110521369 LOC106584531 coding upstream 313509 13615257 ~ 13634264 (-)
LOC110521368 LOC106584530 coding upstream 349110 13650858 ~ 13666753 (-)
G2202263 NA non-coding downstream 40458 13257184 ~ 13257423 (-)
G2202241 NA non-coding downstream 74718 13222897 ~ 13223163 (-)
G2202240 NA non-coding downstream 75239 13222185 ~ 13222642 (-)
G2202163 NA non-coding downstream 146151 13146278 ~ 13151730 (-)
G2202407 NA non-coding upstream 35349 13337097 ~ 13341990 (-)
G2202446 NA non-coding upstream 58395 13360143 ~ 13360537 (-)
G2202449 NA non-coding upstream 61136 13362884 ~ 13363137 (-)
G2202406 NA non-coding upstream 97618 13399366 ~ 13512458 (-)
G2201542 NA other downstream 1047899 12248951 ~ 12249982 (-)
G2199633 NA other downstream 2282913 11014527 ~ 11014968 (-)
LOC110522734 celsr1 other downstream 2367228 10918587 ~ 11012095 (-)
urahb urah other upstream 365466 13666900 ~ 13671199 (-)
si:ch211-106e7.2 LOC106584539 other upstream 560756 13862396 ~ 13897713 (-)
G2203060 NA other upstream 709405 14011153 ~ 14012512 (-)
G2203363 LOC106613263 other upstream 872693 14174441 ~ 14244462 (-)
G2204129 NA other upstream 1223216 14524964 ~ 14525468 (-)

Expression


Co-expression Network