G2202568


Basic Information

Item Value
gene id G2202568
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 13650855 ~ 13652185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2520039
AGAAAATTCACCACTGAatttattttatcaaacaaaaacatgttttatacatTGTAGTATAGCCATTGCTTTCATACACAGAATCTTTTTCTTTATAATACAAATGGAAAAGCGCTTTCTGTCCATCCCCAGTAACTGGAGAACAAGAGGTTGACTGTGCAGTAACAGGCAAACTTACCTTCAGTGCACAATCCAAAACACCAACTACACACAACCACATTTTAAACTAAATGTATTATAGGTTATTACATCAGTAATTCTAAACTGTTGGACAACTTCAGTGGTGACCAGTAGTAATGACAGaactacagtatactggaaatccTGAAATATCTAGGGGGACAATTTTCCCAAACCTATgagaaatatagttgaatagatTGCTTTAAAGTGAGGTAGCAACTTCCTGATTCACACAGATCACCCAATAAAATAATTTGATAAAATGTGTGTAGAGATGTATGCTACTAGCGATACTGTACATCAACAACAGCAGATTACTGGCTCAGCAGAACATCTAAAACTCAGTTTATACATGATTCCAACTTGCGTCCTTTTTCCTGCTCTTGTCTACATGCGTCTAAAAATGTGGGCTCAATCAAAACACATTGTGATCCGATTGTGATCAGATCATCCTGCCCACACATTGTGTCTGAATATCTTGCAAGTGTAGACAGATCTGGACAGAGAAACCATTTAAAATAATTATTCTGCCCTCTAAGTGGCATCATTGACTGAGTACATCAATAGGTTTTACAATAAATATTATTTAGAAAGGATAGCTGTGAAAACATTTGCATAAAAGTAGGAACAGATCTGGTCACAATCCAGAAACAGTGGATGGCTAATAGACACATTTCTGGAAATACGGGCACAATCGGAATGTAGACAAGATCAGGAAAAAGGAAccatgttagcaccaggtataaactgGGCTTAACACCACACTATACAGTTGTAGTGTGAGGGCTTAATCACAAATTACCCGTGCAAGGCTGAGAGATGGAAGAGGCAGTGCACATTTCAACACATCTAGGGGAGTATATTTTTATATTTCTGCCAGTAGCATTTTGATGAACAGCACCTTTATGTCATTGGTATATAGAGATGAACGACATGTTTTGAAATGTAGCATTCATTTGTGGGAGGGAAAGAAATACAGTTGGGAGGAAGCCCCTTTTATTGAAATAAATAGCTGAAGATATCAAAGCACGAGGCAAATGTACATGATTCAGTTGACAAAATTATTTATGTGGAGAAAGAGAACACATGCAACTCATAAAAAGATAAAATCTCTCAAACACAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2520039 True 1306 lncRNA 0.37 2 13650855 13652185

Neighbor

gene id symbol gene type direction distance location
LOC110522741 LOC106584529 coding upstream 128 13582717 ~ 13650727 (+)
tnnt3a LOC100136357 coding upstream 203379 13435735 ~ 13462187 (+)
LOC110521363 LOC106584524 coding upstream 217827 13391307 ~ 13433028 (+)
LOC110521359 LOC106584521 coding upstream 294903 13350858 ~ 13355952 (+)
LOC110521361 LOC100136569 coding upstream 301376 13348157 ~ 13349479 (+)
etfbkmt etfbkmt coding downstream 161120 13813305 ~ 13814906 (+)
LOC110521381 NA coding downstream 262701 13914886 ~ 13945122 (+)
washc4 kiaa1033 coding downstream 304330 13956515 ~ 13981809 (+)
lrrc10 LOC106584482 coding downstream 353273 14005458 ~ 14008111 (+)
fnbp4 LOC106584504 coding downstream 358923 14011108 ~ 14031100 (+)
G2202622 NA non-coding upstream 5095 13645202 ~ 13645760 (+)
G2202621 NA non-coding upstream 6374 13644252 ~ 13644481 (+)
G2202598 NA non-coding upstream 48744 13601882 ~ 13602111 (+)
G2202594 NA non-coding upstream 52651 13597984 ~ 13598204 (+)
G2202345 NA non-coding upstream 246468 13403806 ~ 13404387 (+)
G2202649 NA non-coding downstream 55675 13707860 ~ 13708593 (+)
G2202690 NA non-coding downstream 108879 13761064 ~ 13761522 (+)
G2202702 NA non-coding downstream 130389 13782574 ~ 13783830 (+)
G2202720 LOC106584536 non-coding downstream 150588 13802773 ~ 13806778 (+)
G2202719 LOC106584536 non-coding downstream 155308 13807493 ~ 13810984 (+)
LOC110521355 LOC106584515 other upstream 355695 13292190 ~ 13301806 (+)
G2202196 NA other upstream 449364 13201138 ~ 13201491 (+)
LOC110521323 LOC106561036 other upstream 1853920 11683849 ~ 11796935 (+)
G2198837 NA other upstream 2506183 11144213 ~ 11144672 (+)
G2203653 NA other downstream 907262 14559447 ~ 14567103 (+)
G2203973 NA other downstream 1619860 15272045 ~ 15273733 (+)
G2205546 NA other downstream 2577986 16230171 ~ 16232396 (+)
G2206179 NA other downstream 3511452 17163637 ~ 17164159 (+)
G2206268 LOC106584433 other downstream 3523232 17175417 ~ 17175872 (+)

Expression


Co-expression Network