XLOC_000410 (gpalpp1)


Basic Information

Item Value
gene id XLOC_000410
gene name gpalpp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34685405 ~ 34694365 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000698
GCCAGAAacggactcttattttgaaattcACAGAAAACTCGACACCGGAAATAACAAAAGTGTTCATTGTAGCCTAGCATGTTTCTGggtttgtaaataaatgtatgttttattattattttctcataCGATAACTCCACGATGTCTGACGAGAACGTAATTGGACCAGCTCTGCCACCgacattaaaaaaagatgagAATTCAGATGATGATGGAGCAATCATAGGTCCAGCTCTGCCTCCTCTGTATAAAGCTTCGGAGTCCTCCAGTTCATGTGAAGACAGTGATGAAGAGGAGGTTGTCTTTAAGAGGGCCAAATATTCGTCATCTAGGAACCGGTCTTCTTCAAACAGCAGAAGCACCACAAAAGATGAGATGGATATAAAGCAAACATATAAACATGAGGATGAGGAGGATTTCTTTGGTCCAGCACTTCCCCCAGGATTTCAGAAGCGAGACAAGTCACCTGACGGGCAATCATTACAAGGACCAGCACTCCCTCCTGGATTCAAAAACCAAGATGAAGATGAAGCTGGTGCAAAAGAGGATAAGGGAGGGTTTTCGGGACCAGCTCTTCCCCCGGGATATCGAAAGCGAGATAAATCTCCTGAACGGCCACCAGCAATAGGGCCTGCTCTACCTCCAGGGTTTAAAAGACTGGATGATAATGAAGAGGAAGAAAAAGATGAAGCTGAAGGATTTTCAGGACCAGCTCTACCACCAGGTTTTAAACCAGACTTGTCAAGcagtgaagaagaagaagatgattaTGTGATTGGGCCCATGCCATCAAAAGGACCGTTTCAGGACACGGTTGCACTGGACTTTGAAAGAAGGGCTCAACAAATGAAAGACAAACTTACAGGAGTGGATacTGGACCAACAGTCCTCTCCAGAGAGAGCTGGATGACAGAACTGCCTCCTGAGTTGCAGCATGTAGGCCTGGAAGCACGAACCTTCAAGAAAAGAACAGGCCCTGAAAACAAAGACCGCTCAATCTGGACTGACACTCCTGCAGACCGCGAGCGCAAAGCAAGAGAACGACAAGAAGCTAAGGAAAAAGGTGAATCAGCCAAGGATGATGTGCCTCGTCTGTCTCAGAAAGAGCTCGAGATGGCTGACAAAATTTCCAAATATAATGAGTCCAAGCGTGGTGAATCTCTCATCAGTTTGCACACTAAGAAAATGAAGAGAAAAGCTGAGGAGGATGCTAAAAAGCCTGTAGAGAGAAGACCCTTTGACAGAGATGCGGACCTCCAAGTCAATCGCTTTGATGAAGCTCAGAAAAAAGCTTTGCTAAAGAAGTCAGCTGAACTGAACACCCGCTTCTCACACAGCAAAGACCGCATGTTCCTGTGAGAGAAAGAGTCATCTGATTTTATAAAAAGATGTTGTAGTGTTTTGGCATCATTAAAACATGATCATAAAAATGCTTATATGtataataattgaaaataatgtTACTTCTAAATTTTCTTGGATTTTTTAAGGTTTAAAACGCTAAGTTTTAGTGTTACCTTTTTTCATAATATCATGAAAATTTCAGTCTTGTCTTTATCTAGTGATATGCTAACATTCCACTCATTTTTGTCAGTGTTAAAGGTGTTATAGGTAGTGCATTATTTTACAGTCTGTACTGTTTTCATAGAATATGTCACATTCAGGTCATATTTTgccctaaaataaaatacatttataaca
>TCONS_00000699
GACACCGGAAATAACAAAAGTGTTCATTGTAGCCTAGCATGTTTCTGggtttgtaaataaatgtatgttttattattattttctcataCGATAACTCCACGATGTCTGACGAGAACGTAATTGGACCAGCTCTGCCACCgacattaaaaaaagatgagAATTCAGATGATGATGGAGCAAATTCTGCCTCCAGTCATAGGTCCAGCTCTGCCTCCTCTGTATAAAGCTTCGGAGTCCTCCAGTTCATGTGAAGACAGTGATGAAGAGGAGGTTGTCTTTAAGAGGGCCAAATATTCGTCATCTAGGAACCGGTCTTCTTCAAACAGAAGCACCACAAAAGATGAGATGGATATAAAGCAAACATATAAACATGAGGATGAGGAGGATTTCTTTGGTCCAGCACTTCCCCCAGGATTTCAGAAGCGAGACAAGTCACCTGACGGGCAATCATTACAAGGACCAGCACTCCCTCCTGGATTCAAAAACCAAGATGAAGATGAAGCTGGTGCAAAAG
>TCONS_00000700
ATTGTAGCCTAGCATGTTTCTGggtttgtaaataaatgtatgttttattattattttctcataCGATAACTCCACGATGTCTGACGAGAACGTAATTGGACCAGCTCTGCCACCgacattaaaaaaagatgagAATTCAGATGATGATGGAGCAATCATAGGTCCAGCTCTGCCTCCTCTGTATAAAGCTTCGGAGTCCTCCAGTTCATGTGAAGACAGTGATGAAGAGGAGGTTGTCTTTAAGAGGGCCAAATATTCGTCATCTAGGAACCGGTCTTCTTCAAACAGAAGCACCACAAAAGATGAGATGGATATAAAGCAAACATATAAACATGAGGATGAGGAGGATTTCTTTGGTCCAGCACTTCCCCCAGGATTTCAGAAGCGAGACAAGTCACCTGACGGGCAATCATTACAAGGACCAGCACTCCCTCCTGGATTCAAAAACCAAGATGAAGATGAAGCTGGTGCAAAAGAGGATAAGGGAGGGTTTTCGGGACCAGCTCTTCCCCCGGGATATCGAAAGCGAGATAAATCTCCTGAACGGCCACCAGCAATAGGGCCTGCTCTACCTCCAGGGTTTAAAAGACTGGATGATAATGAAGAGGAAGAAAAAGATGAAGCTGAAGGATTTTCAGGACCAGCTCTACCACCAGGTTTTAAACCAGACTTGTCAAGcagtgaagaagaagaagatgattaTGTGATTGGGCCCATGCCATCAAAAGGACCGTTTCAGGACACGGTTGCACTGGACTTTGAAAGAAGGGCTCAACAAATGAAAGACAAACTTACAGGAGTGGATacTGGACCAACAGTCCTCTCCAGAGAGAGCTGGATGACAGAACTGCCTCCTGAGTTGCAGCATGTAGGCCTGGAAGCACGAACCTTCAAGAAAAGAACAGGCCCTGAAAACAAAGACCGCTCAATCTGGACTGACACTCCTGCAGACCGCGAGCGCAAAGCAAGAGAACGACAAGAAGCTAAGGAAAAAGGTGAATCAGCCAAGGATGATGTGCCTCGTCTGTCTCAGAAAGAGCTCGAGATGGCTGACAAAATTTCCAAATATAATGAGTCCAAGCGTGGTGAATCTCTCATCAGTTTGCACACTAAGAAAATGAAGAGAAAAGCTGAGGAGGATGCTAAAAAGCCTGTAGAGAGAAGACCCTTTGACAGAGATGCGGACCTCCAAGTCAATCGCTTTGATGAAGCTCAGAAAAAAGCTTTGCTAAAGAAGTCAGCTGAACTGAACACCCGCTTCTCACACAGCAAAGACCGCATGTTCCTGTGAGAGAAAGAGTCATCTGATTTTATAAAAAGATGTTGTAGTGTTTTGGCATCATTAAAACATGATCATAAAAATGCTTATATGtataataattgaaaataatgtTACTTCTAAATTTTCTTGGATTTTTTAAGGTTTAAAACGCTAAGTTTTAGTGTTACCTTTTTTCATAATATCATGAAAATTTCAGTCTTGTCTTTATCTAGTGATATGCTAACATTCCACTCATTTTTGTCAGTGTTAAAGGTGTTATAGGTAGTGCATTATTTTACAGTCTGTACTGTTTTCATAGAATATGTCACATTCAGGTCATATTTTgccctaaaataaaatacattt

Function

symbol description
gpalpp1 Orthologous to human GPALPP1 (GPALPP motifs containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-212 Orthologous to human GPALPP1 (GPALPP motifs containing 1).

Ensembl:

ensembl_id ENSDARG00000058287

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000698 False 1701 mRNA 0.41 8 34685405 34694365
TCONS_00000699 False 514 nonsense_mediated_decay 0.43 4 34685445 34688642
TCONS_00000700 True 1627 mRNA 0.41 8 34685470 34694359

Neighbor

gene id symbol gene type direction distance location
XLOC_000409 klf12a coding upstream 126601 34496855 ~ 34558804 (+)
XLOC_000408 NA coding upstream 230958 34450659 ~ 34454447 (+)
XLOC_000407 CR848003.1 coding upstream 285051 34400240 ~ 34400354 (+)
XLOC_000406 kctd12.2 coding upstream 388002 34295925 ~ 34297403 (+)
XLOC_000405 slc5a7a coding upstream 423412 34243650 ~ 34261993 (+)
XLOC_000411 gtf2f2a coding downstream 1008 34695373 ~ 34706903 (+)
XLOC_000412 CR339054.7 coding downstream 2138 34696503 ~ 34727517 (+)
XLOC_000413 zgc:172122 coding downstream 69174 34763539 ~ 34807059 (+)
XLOC_000414 NA coding downstream 163003 34857368 ~ 34861057 (+)
XLOC_000415 NA coding downstream 339929 35034294 ~ 35093512 (+)
XLOC_000403 dre-mir-734 non-coding upstream 562433 34122880 ~ 34122972 (+)
XLOC_000401 CT573012.1 non-coding upstream 718132 33967157 ~ 33967273 (+)
XLOC_000400 CU915566.1 non-coding upstream 950271 33735018 ~ 33735134 (+)
XLOC_000421 NA non-coding downstream 1202027 35896392 ~ 35898437 (+)
XLOC_000425 BX324156.1 non-coding downstream 1459896 36154261 ~ 36154377 (+)
XLOC_000431 NA non-coding downstream 2271635 36966000 ~ 36966282 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_03844455_03850424 GPALPP1 coding CI01000049 null 3844455 ~ 3850430 (+)