G2212563 (LOC106584318)


Basic Information

Item Value
gene id G2212563
gene name LOC106584318
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 23208775 ~ 23210516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2531115
agttttgatgtcttcactattactctacaatgtagaaaatagccaaaataaagaaatgagtaggtgtgtccaaactttttactgcaCATTCCGTTcacagcatcaacaaaactctctctatactcttaagtgtgttcaggtgtgttgacCATGACCACTAATgagccacacctgatcttaataaGTGCGTGTTTCCTTTGAAATAGGGTCTGTTGAATAGAGTAAAATTAACAGCTTTGTTTAAGTTAAAAAAAGCATGGCATGCTAACTACATCCTGGTGgcacagtggactaattccatgaaTAGAAAACAGAGGattataggtttgaatctcactggcgctgtgccacaataaaaaaaaaaatgtgtttgcatgattaatgcctcatgaatgtcctatctgtgcttggagttcaaaacagtaAAACTACCTATAATTtacgttctcagaacgttaataaaACTTTCAGGTAAccatagtaaaatgttctcagatcctctctgcaacctaaaaatgtacTTTCCCAGAAGAGACAATATTttcacttccattctcagaaTGTTTAAAAAACGTTGCATTTTACTGGTGAAGAAACTTATGGCTTCGTTGCCAGGACCAAGAACTTTCGTTGCCACAATTTCCAAgcaaccaaatgtgctagctgggttgtTTTAAAGCAGTGTCTGATGTGACAGCCAATGTCTGCTTCGGATCCCTACACACCAATCACGGTTTCATGATCCACAAAGATCTAACAATTGAGAGCTTTCTTCTTATCTTACATGAGGAAAAGAGAACAATTTTAATACATTCCTGCTACTTCAGTCTCACATGCTATTTTCAGCTACATACTGTACTTGAAACATACTTATTATTTTTCATAGGTCTAAGCAGTGAGGACACATTCTCCCCAGTTATTCGACTTTGTTCAAACAACAATCAAAATGCAACTGGTGAACTTTTGCACTGTACGTCAGCAGTGCACTTCCCATATCTTCCCTGTCTTATTTATTTGGCAAACATATtgcactcctacacacacacacacagacagatgcacACTCAGTACACGCCCTGACAGTGTACTTCAGACTGAGgacccctgtctctctggtacccagTTTTGCtgtccatcttcctcctcttcctctcccagtcCCGGCCCTAACAGCGGTCATCCTCGTCGGTGTCACACAGGAGCTCGCAGGCGGCCACAGAGCTGGCCTGACCCAGGCGTTTATGGAAGTGTCCGTTGGGGACCTGCCAGTTGTGTCTGAGCTGGGGGGCAGAGCTGATGGTGTTGGCCCGACCCAGACTGGTTGCAATGGCCACCTCAAAGGTCAGAGtctcctccaggcctgaggagtCTGGGCTGTGGAACTCCTCGTGCAGGGGCAGGTATGGCTCCGAGATGTACCGGTGAGGGGAGGGATGTGGGtgactgacccctaaccctgggtcactcacccctactaccaccccCACCCCCGATCCTCCTCCTGCCACCTGGGCtggcctctcctcttcctccctccacaaGGGCTCCTCCGTCTCTCCAGGGGCCTCCTGGGTCTGGGCTCTGCCCTCGCTGACAGCAGGGGGGGAGGGGTGGGCTCGGCATATCAGGGGGGAGTAGGAGATGTGAGGGCGTGGCCGCGATGGCGTCTGGGGGAGCTGCCGACGGCCACTGGGGGTGCTGGACTCAGAGTTAGGCGGGCCTGGGCTGCCTGAAGTGTTGCC
>TU2531116
agttttgatgtcttcactattactctacaatgtagaaaatagccaaaataaagaaatgagtaggtgtgtccaaactttttactgcaCATTCCGTTcacagcatcaacaaaactctctctatactcttaagtgtgttcaggtgtgttgacCATGACCACTAATgagccacacctgatcttaataaGTGCGTGTTTCCTTTGAAATAGGGTCTGTTGAATAGAGTAAAATTAACAGCTTTGTTTAAGTTAAAAAAAGCATGGCATGCTAACTACATCCTGGTGgcacagtggactaattccatgaaTAGAAAACAGAGGattataggtttgaatctcactggcgctgtgccacaataaaaaaaaaaatgtgtttgcatgattaatgcctcatgaatgtcctatctgtgcttggagttcaaaacagtaAAACTACCTATAATTtacgttctcagaacgttaataaaACTTTCAGGTAAccatagtaaaatgttctcagatcctctctgcaacctaaaaatgtacTTTCCCAGAAGAGACAATATTttcacttccattctcagaaTGTTTAAAAAACGTTGCATTTTACTGGTGAAGAAACTTATGGCTTCGTTGCCAGGACCAAGAACTTTCGTTGCCACAATTTCCAAgcaaccaaatgtgctagctgggttgtTTTAAAGCAGTGTCTGATGTGACAGCCAATGTCTGCTTCGGATCCCTACACACCAATCACGGTTTCATGATCCACAAAGATCTAACAATTGAGAGCTTTCTTCTTATCTTACATGAGGAAAAGAGAACAATTTTAATACATTCCTGCTACTTCAGTCTCACATGCTATTTTCAGCTACATACTGTACTTGAAACATACTTATTATTTTTCATAGGTCTAAGCAGTGAGGACACATTCTCCCCAGTTATTCGACTTTGTTCAAACAACAATCAAAATGCAACTGGTGAACTTTTGCACTGTACGTCAGCAGTGCACTTCCCATATCTTCCCTGTCTTATTTATTTGGCAAACATATtgcactcctacacacacacacacagacagatgcacACTCAGTACACGCCCTGACAGTGTACTTCAGACTGAGgacccctgtctctctggtacccagTTTTGCtgtccatcttcctcctcttcctctcccagtcCCGGCCCTAACAGCGGTCATCCTCGTCGGTGTCACACAGGAGCTCGCAGGCGGCCACAGAGCTGGCCTGACCCAGGCGTTTATGGAAGTGTCCGTTGGGGACCTGCCAGTTGTGTCTGAGCTGGGGGGCAGAGCTGATGGTGTTGGCCCGACCCAGACTGGTTGCAATGGCCACCTCAAAGGTCAGAGtctcctccaggcctgaggagtCTGGGCTGTGGAACTCCTCGTGCAGGGGCAGGTATGGCTCCGA
>TU2531112
tttttactgcaCATTCCGTTcacagcatcaacaaaactctctctatactcttaagtgtgttcaggtgtgttgacCATGACCACTAATgagccacacctgatcttaataaGTGCGTGTTTCCTTTGAAATAGGGTCTGTTGAATAGAGTAAAATTAACAGCTTTGTTTAAGTTAAAAAAAGCATGGCATGCTAACTACATCCTGGTGgcacagtggactaattccatgaaTAGAAAACAGAGGattataggtttgaatctcactggcgctgtgccacaataaaaaaaaaaatgtgtttgcatgattaatgcctcatgaatgtcctatctgtgcttggagttcaaaacagtaAAACTACCTATAATTtacgttctcagaacgttaataaaACTTTCAGGTAAccatagtaaaatgttctcagatcctctctgcaacctaaaaatgtacTTTCCCAGAAGAGACAATATTttcacttccattctcagaaTGTTTAAAAAACGTTGCATTTTACTGGTGAAGAAACTTATGGCTTCGTTGCCAGGACCAAGAACTTTCGTTGCCACAATTTCCAAgcaaccaaatgtgctagctgggttgtTTTAAAGCAGTGTCTGATGTGACAGCCAATGTCTGCTTCGGATCCCTACACACCAATCACGGTTTCATGATCCACAAAGATCTAACAATTGAGAGCTTTCTTCTTATCTTACATGAGGAAAAGAGAACAATTTTAATACATTCCTGCTACTTCAGTCTCACATGCTATTTTCAGCTACATACTGTACTTGAAACATACTTATTATTTTTCATAGGTCTAAGCAGTGAGGACACATTCTCCCCAGTTATTCGACTTTGTTCAAACAACAATCAAAATGCAACTGGTGAACTTTTGCACTGTACGTCAGCAGTGCACTTCCCATATCTTCCCTGTCTTATTTATTTGGCAAACATATtgcactcctacacacacacacacagacagatgcacACTCAGTACACGCCCTGACAGTGTACTTCAGACTGAGgacccctgtctctctggtacccagTTTTGCtgtccatcttcctcctcttcctctcccagtcCCGGCCCTAACAGCGGTCATCCTCGTCGGTGTCACACAGGAGCTCGCAGGCGGCCACAGAGCTGGCCTGACCCAGGCGTTTATGGAAGTGTCCGTTGGGGACCTGCCAGTTGTGTCTGAGCTGGGGGGCAGAGCTGATGGTGTTGGCCCGACCCAGACTGGTTGCAATGGCCACCTCAAAGGTCAGAGtctcctccaggcctgaggagtCTGGGCTGTGGAACTCCTCGTGCAGGGGCAGGTATGGCTCCGAGATGTACCGGTGAGGGGAGGGATGTGGGtgactgacccctaaccctgggtcactcacccctactaccaccccCACCCCCGATCCTCCTCCTGCCACCTGGGCtggcctctcctcttcctccctccacaaGGGCTCCTCCGTCTCTCCAGGGGCCTCCTGGGTCTGGGCTCTGCCCTCGCTGACAGCAGGGGGGGAGGGGTGGGCTCGGCATATCAGGGGGGAGTAGGAGATGTGAGGGCGTGGCCGCGATGGCGTCTGGGGGAGCTGCCGACGGCCACTGGGGGTGCTGGACTCAGAGTTAGGCGGGCCTGGGCTGCCTGAAGTGTTGCC

Function

NR:

description
voltage-dependent R-type calcium channel subunit alpha-1E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2531115 False 1742 lncRNA 0.48 1 23208775 23210516
TU2531116 False 1412 TUCP 0.43 1 23208775 23210186
TU2531112 True 1667 TUCP 0.49 1 23208850 23210516

Neighbor

gene id symbol gene type direction distance location
LOC110521563 LOC106584328 coding upstream 239118 22965102 ~ 22969657 (+)
LOC110521559 LOC106613894 coding upstream 462949 22663268 ~ 22745826 (+)
dnttip2 LOC106584334 coding upstream 1057059 22142796 ~ 22151716 (+)
LOC110521555 LOC106584335 coding upstream 1067193 22127258 ~ 22141582 (+)
mrpl55 LOC106584336 coding upstream 1083465 22121775 ~ 22125310 (+)
LOC110521574 LOC106584317 coding downstream 169831 23380347 ~ 23420136 (+)
qsox1 LOC106584316 coding downstream 212618 23423134 ~ 23443763 (+)
LOC110521576 LOC106584315 coding downstream 239614 23450130 ~ 23472394 (+)
LOC110521578 LOC106584313 coding downstream 300053 23510569 ~ 23610545 (+)
LOC110521584 LOC106584308 coding downstream 460181 23670697 ~ 23743514 (+)
G2212562 NA non-coding upstream 3507 23204467 ~ 23205268 (+)
G2212560 NA non-coding upstream 6244 23201128 ~ 23202531 (+)
G2212559 NA non-coding upstream 8028 23199673 ~ 23200747 (+)
G2212530 NA non-coding upstream 44631 23163930 ~ 23164144 (+)
G2212483 LOC106584319 non-coding upstream 81230 23124500 ~ 23127545 (+)
G2212564 NA non-coding downstream 486 23211002 ~ 23211292 (+)
G2212568 NA non-coding downstream 5428 23215944 ~ 23216171 (+)
G2212570 NA non-coding downstream 9162 23219678 ~ 23220211 (+)
G2212571 NA non-coding downstream 10004 23220520 ~ 23220794 (+)
G2212572 NA non-coding downstream 10621 23221137 ~ 23221459 (+)
G2212455 LOC106584324 other upstream 156917 23050488 ~ 23051858 (+)
G2211556 NA other upstream 1544936 21659650 ~ 21663839 (+)
LOC110521540 LOC106584347 other upstream 1923484 21273731 ~ 21290307 (+)
G2209830 NA other upstream 2757183 20451162 ~ 20451592 (+)
LOC118945811 NA other upstream 3490120 19709234 ~ 19719196 (+)
G2213751 NA other downstream 138483 23348999 ~ 23349217 (+)
G2216024 LOC106584303 other downstream 1820482 25030998 ~ 25174051 (+)
G2216357 NA other downstream 2153736 25364252 ~ 25373610 (+)
LOC110522768 LOC106584287 other downstream 2357324 25566527 ~ 25590680 (+)

Expression


Co-expression Network