G2216314 (LOC106584296)


Basic Information

Item Value
gene id G2216314
gene name LOC106584296
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25278734 ~ 25280330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2535075
TGCGCTTATCCAGAGTGACGTACAGTGCTgagtacatacattttcatattttttcGTAGCGGTCCCCAGTGTGaaacaaacccacaaccctggctttgcaagcgccatgctctaccaactgagccacacagaacCATATCTACATATCTAATGAAAAGGGGTTTAACCTCATTCAAAACCAGGGGGAAAAAATAAAATCAATGGGGGATCTGACAGTTCCAGTGGGAATGGTAGATAATTTTGTTGTGAGACAAGAGTATAACTATGCCTGTGTTTAATCAAGAACAGAGACACGTGTTGATGACTAATCATGTGTGTCAAGAATGTACTTGTGGTAATATGTATTTGTAATGGCCTAATTAATCTTATAATTTCCTCGAGGTGATGGCCATTCAGCCCCCAGAGGGTACCTATATGCATCCGATTAATTTGACCAGATCAGTGCAAGACCCCAGCCTCTCTAACCAGCTGAAAAACAGCATCCACAACTGCCCTGTCTCTCAACTACTAGGCTGAGCGAAGCAACCTGTGTACAGCATCTGAGCTATCGATGCATGTGTCCTGAGACTAAGCACATGGAGCAGGCATGGGGAGATCTTATCGAAACTTCTATCATGCTACTGGTGTGTGGGAGAATCTGATGAGGCAGAATGTGCAGCAGGTGATGGTGGTGAAAGCTTGTCTGGTTGGTTGCaaacaatgttgttgttgtttaaatgGCAGATTGATTGTAGTAATCTATATGCATTAAGGCATCTGTGGTCATAGGGCGCGACATATGTTTATGTCTGTTTGACCAAAGGGGGACTGTAAAGGGAAAATGAATTTATCAATTATTTTCCAGTATTTGATTTACTGATTATATTAATTGGCATGTAATTAGCATGATTATATGTGTGGGAAGACATTTCCCTTATTAGTCTACAATTATCTGTTGGAACTAAGTAAAGATGTTCATACTTTTGACCTATTTAACTAACAATATCAAATGTCTGCCAGTGTTGAATGTTATGGTTAAAGTTTGACACCAGACTGAGTCGAGGGCACACATCTGTGACACTTTGCGATTCTGTAGCAGATGATATTGTGACTTCCTTCAAGCCTCTCAGgctggtgtttataggacattaGGTGCTGTGTGAACGATTTCTCCCCTGTTCGTGTCAACTGATGTATGGTATGGTCTCTGAAAAATCCAAAACAATTGTCACACAGAGCACTGAAAAGTATTTTTTCCTTTGTGTGTTTTCTGGTGTGCTTTGAGAGCTTCTAGCTGGCCAGAGGACTTCTTACACCTGTGGACATTATAGGGTCTATGTCCAGTGTGGGTCTTCTTATGTGTCAACTGATGTCTCTTAAAATCTCTGGAAAAGCAAAAACATTTGTCACATTGAGAGCATTTATATGGTCTTCCTGTGTGGATCATTTCATGTCTAATCCGTTGGGATCGTTCTCCAAATCCTTTCCCACACTCAAAGCATTTATATGGTCTCTCCCCAGTGTGAGTCCTTCTGTGTGTTTTAAGTGATTCAGCGCAGACATAGCTCTTCCCACAGTCTACACAATgatagggtttc

Function

NR:

description
zinc finger and SCAN domain-containing protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2535075 True 1577 lncRNA 0.41 2 25278734 25280330

Neighbor

gene id symbol gene type direction distance location
LOC110522767 LOC106584297 coding upstream 7659 25269055 ~ 25271075 (+)
LOC110521597 LOC106584301 coding upstream 24721 25246389 ~ 25254013 (+)
LOC110522766 NA coding upstream 59444 25208384 ~ 25219290 (+)
LOC110521595 LOC106584300 coding upstream 133788 25123708 ~ 25144946 (+)
LOC110521596 LOC106584302 coding upstream 155156 25120648 ~ 25123578 (+)
LOC110521600 NA coding downstream 17465 25297795 ~ 25299938 (+)
LOC110521603 LOC106584291 coding downstream 75819 25356149 ~ 25382798 (+)
LOC110521605 NA coding downstream 131983 25412311 ~ 25426874 (+)
rpf1 rpf1 coding downstream 251319 25531649 ~ 25540983 (+)
LOC110522768 LOC106584287 coding downstream 286197 25566527 ~ 25590680 (+)
G2216088 NA non-coding upstream 90886 25133633 ~ 25187848 (+)
G2216024 LOC106584303 non-coding upstream 104683 25030998 ~ 25174051 (+)
G2216096 NA non-coding upstream 125261 25153092 ~ 25153473 (+)
G2216073 NA non-coding upstream 137693 25114519 ~ 25141041 (+)
LOC110522765 pik3ca non-coding upstream 172111 25097302 ~ 25108568 (+)
G2216336 tgm1 non-coding downstream 34199 25314529 ~ 25377233 (+)
G2216348 rabggta non-coding downstream 59499 25339829 ~ 25341601 (+)
G2216355 NA non-coding downstream 70515 25350845 ~ 25355952 (+)
LOC110521610 NA non-coding downstream 402104 25682300 ~ 25687956 (+)
LOC110521578 LOC106584313 other upstream 1693154 23510569 ~ 23610545 (+)
G2213751 NA other upstream 1929517 23348999 ~ 23349217 (+)
G2212563 LOC106584318 other upstream 2068218 23208775 ~ 23210516 (+)
G2212455 LOC106584324 other upstream 2226876 23050488 ~ 23051858 (+)
G2216357 NA other downstream 83922 25364252 ~ 25373610 (+)
LOC110521611 LOC106584283 other downstream 407761 25688091 ~ 25825503 (+)
G2217159 LOC106584278 other downstream 846724 26127054 ~ 26133044 (+)
G2217442 NA other downstream 1327193 26607523 ~ 26607943 (+)

Expression


Co-expression Network