G2216336 (tgm1)


Basic Information

Item Value
gene id G2216336
gene name tgm1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25314529 ~ 25377233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2535116
CTTCAAGGTTACTTCCATTAGTGACTGGCTTGTCACCATTCCCCGCAAGCTTGTCTGCATCATCGATCCCTGTGACAACCTTATCTGCGATGTCATCATCTTTGCTCGGTCTTTGACAGCAACAAGGACAGATCTTACGTAACCATTGTCGACACCCCCCTTCTTCTGTGTTCTTCTCTGGCTCCTCATCTTTCTCCCATCCCAGTGTGACTGATGGGAAGCGACCAACTGTAGACGTGTTTCTGACTGATGcagcccccccccc

Function

symbol description
tgm1 Predicted to enable protein-glutamine gamma-glutamyltransferase activity. Predicted to be involved in peptide cross-linking. Is expressed in second tier layer of breeding tubercle and spinous layer of breeding tubercle. Human ortholog(s) of this gene implicated in autosomal recessive congenital ichthyosis 1. Orthologous to human TGM1 (transglutaminase 1).

NR:

description
protein-glutamine gamma-glutamyltransferase K-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2535116 True 265 lncRNA 0.51 2 25314529 25377233

Neighbor

gene id symbol gene type direction distance location
LOC110521600 NA coding upstream 14591 25297795 ~ 25299938 (+)
LOC110522767 LOC106584297 coding upstream 43454 25269055 ~ 25271075 (+)
LOC110521597 LOC106584301 coding upstream 60516 25246389 ~ 25254013 (+)
LOC110522766 NA coding upstream 95239 25208384 ~ 25219290 (+)
LOC110521595 LOC106584300 coding upstream 169583 25123708 ~ 25144946 (+)
LOC110521605 NA coding downstream 35080 25412311 ~ 25426874 (+)
rpf1 rpf1 coding downstream 154416 25531649 ~ 25540983 (+)
LOC110522768 LOC106584287 coding downstream 189294 25566527 ~ 25590680 (+)
LOC110521607 LOC106584286 coding downstream 259349 25636582 ~ 25653905 (+)
LOC110521610 NA coding downstream 305067 25682300 ~ 25687956 (+)
G2216314 LOC106584296 non-coding upstream 34199 25278734 ~ 25280330 (+)
G2216088 NA non-coding upstream 126681 25133633 ~ 25187848 (+)
G2216024 LOC106584303 non-coding upstream 140478 25030998 ~ 25174051 (+)
G2216096 NA non-coding upstream 161056 25153092 ~ 25153473 (+)
G2216073 NA non-coding upstream 173488 25114519 ~ 25141041 (+)
G2217031 NA non-coding downstream 521991 25899224 ~ 25899854 (+)
G2217047 NA non-coding downstream 539743 25916976 ~ 25917700 (+)
LOC110521625 mettl13 non-coding downstream 936247 26312180 ~ 26314731 (+)
LOC110521578 LOC106584313 other upstream 1728949 23510569 ~ 23610545 (+)
G2213751 NA other upstream 1965312 23348999 ~ 23349217 (+)
G2212563 LOC106584318 other upstream 2104013 23208775 ~ 23210516 (+)
G2212455 LOC106584324 other upstream 2262671 23050488 ~ 23051858 (+)
LOC110521611 LOC106584283 other downstream 310858 25688091 ~ 25825503 (+)
G2217159 LOC106584278 other downstream 749821 26127054 ~ 26133044 (+)
G2217442 NA other downstream 1230290 26607523 ~ 26607943 (+)
LOC110521633 LOC106584207 other downstream 1344752 26695809 ~ 26795605 (+)

Expression


Co-expression Network