G2216355


Basic Information

Item Value
gene id G2216355
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25350845 ~ 25355952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2535135
caacacatcaaaaataaaaatacaagaaTTAGGGTCAGAAATCCAATAACCACCAGTGATGCATACTCACCAAGCCACACCCCCATCCAAGACATCCAGCCAGACTCCTCCACCCCAGCCACGCCCTTCATTTCTGCCGAAAGCTCGTCCAATCCAACCAATGCTTTTGATATACTCCCATCAGGACTGGTATTATTAGGTATAAATGTACAACATTGTTCACCAAACATTTTGCAAACCCCTCCCTGACTGGCCAGGATCATATCTAAAGTCAATCTATTCTGCCTGGCGGTCCTGGTAGTAGCCTCCAATTGCTTGGCCATACCAGTAAGGGCAGAGCGGGTATAGTTAACAAAACATTGTTGATTATAGTATATTTAGTTTATCCATGAGGTCTGTTTGGCATCCACAATAGCGGAGCCAAGAATTGGTAGTAGATGCCATAAACCATCATTCCTGTTTAGGGCCTAGAATTCCTAAGGAACACCTACTGGCACACCTAGTAGGTTGAAATGTATATTATCTGTTTCCTCAGACCAAGGTGTATCACGCTTATATCTGGAGTACGGGTGAACATCATTAGGTGCTTTTCTAGTAGATCCCAGGAGCTGATTAGCTGTAACTTCAATAATGGTTAGTGGTACTATCAGACTGGCTAAAGCACACATACCCTGCCAATAAAGCAGGCCTATGCTTTAATGGTGCGCAAGAGACCTGGGTTTGGACCCTGTGTGTTGGTTACaaattttggcagtgattacagccttgagtcttcttcggGAATGACTCCTGTGTTTtcatgactgtgtgcttagggtctatgtcctgttggaaggtgaacctgctctggagcaggttttcatcaaggatctctctgtactttgctccgttcatctttccctcgatcctgactagtctcccagtaactgccgctgaaaaacatccccacagtcaatgctgccaccaccatgcttcaccgtagggatggtgccaggtttcctccagatgtgacacttgacattcaggccaaagagttcaatcttggtttcatcagaccagagaatcttgtttctcatggtctgaaagttctttaggtgccttttggcaaataccaagcgagctgtcatgtgtcttccgtgacttccgtctggccactctaccataaaggcctgattcgtggagtgctgcagagatggttgtccttctggaaggttctctcatttccacagaggaactctggagctctgtcagagtgaccatcgggttcttggtcacctccctgaccaaggcccttctcccccgattgctcagtttggctgggcggccagctctaggaagagtcttggtggttcaaaacttcttccatttaggaatgatggagccCACTGTGTTTTGGGGGACCTTctatgctgcagaatttttttggtagccttccccagatctgtgtctcgacacaaccctgtctcggtGCTCCaagaacaattccttcgacctcatgcactgtcaactgtgggaccttatacagacaggtgcgtgcctttccaaatcatgtccaatcaatttaatttaccccaggtggaccaatcaagttgtagaaacatctcaaggatgatcaatggaaacagggtgcacctgagctcaatttcaagtctcatagcaaacggtcggaatacttatgcaaattagggtatttatgttttttatatttaatacatttgtaaaaacctgttttcgctttgtcattatggggtattgtgtgtagattgatgaggaaaacattttatttaatccattttagaataagactgtaacataacaaaatgtggaaaaggtcaaggggtctggatactttctgatttcaactgtatagATTGATTGAATGTTATTTTGTAAGGCAGGCGATCACGTGTGTTCAAGCCCAGTAAGGGGgaagggacagtggaggaagcgATACAGGTTACAAACATTTATTTAGAACATAAGGAGAATAATAATTATATTATGATTATTCTACTACCTTTAAGTGACAAATATGGTTACTGATGATATGTCAGTAAGATGCTGAAGATGTCCAAAAGAAAATAAGAATATCATTCCTTGTAATAAAGACTACATTTTTATAGATGCATCCAGCTGCAGTCCCGCAGCATGGCATGTCACTAAAACGGTGATGTCATCAAAAAACTGGCCTCTTATTAAAGGGTCAATCTGGAGTTGTTACATCCATTTTTCGATTTATAAAATCATGATTTTGTAGTGAACGGCGGGGCAGGGAATAGAACCCAGGTTGTTAGCTTGGAAGGCAAACACAATTTCACTGATCTTAGGACCAGAAAGCATTTTtgtctgcagttttcggtttggctatttgtttcaagtgtatgtGGTGGTTCTAGTTTGTATGGCGCCCTGGGCGAACCCTCCCTTCAGCGCCCGCACCCGGGGGCGGGTTTAAAATGCCGCCCTGGGTGGCTGCCCATGTCGCCCGTACCTAAATCCGCTACTGACTTGTATTAGTCTCTAAATAAATCTCTTTGTCAAACATTTTCATCACTCCCATGTCTTACGCGACTAGTATTTTTGAAAGTGTAGGATAATAATTCAGCCATAGTTTATGTTCATTGCTTTCCAACATTTTACTCCCTCCTTTATGTTTAATATAACTCACATATATTAATTATTCCTTTTGGTTGCCTATCTTGACATGACGTatgttctatagaaagtatttgaatctgatgtgtgccacagaaagtatttgactcttgGGGGAGAATTCTGCCAGGGGGAGATTTGGAAGGCGCCTCagcgtcaggacaggcaagggtcaaaaccaggagggcgagaataag

Function

NR:

description
uncharacterized protein LOC110503969

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2535135 True 2852 lncRNA 0.43 2 25350845 25355952

Neighbor

gene id symbol gene type direction distance location
LOC110521600 NA coding upstream 50907 25297795 ~ 25299938 (+)
LOC110522767 LOC106584297 coding upstream 79770 25269055 ~ 25271075 (+)
LOC110521597 LOC106584301 coding upstream 96832 25246389 ~ 25254013 (+)
LOC110522766 NA coding upstream 131555 25208384 ~ 25219290 (+)
LOC110521595 LOC106584300 coding upstream 205899 25123708 ~ 25144946 (+)
LOC110521603 LOC106584291 coding downstream 197 25356149 ~ 25382798 (+)
LOC110521605 NA coding downstream 56361 25412311 ~ 25426874 (+)
rpf1 rpf1 coding downstream 175697 25531649 ~ 25540983 (+)
LOC110522768 LOC106584287 coding downstream 210575 25566527 ~ 25590680 (+)
LOC110521607 LOC106584286 coding downstream 280630 25636582 ~ 25653905 (+)
G2216348 rabggta non-coding upstream 9244 25339829 ~ 25341601 (+)
G2216314 LOC106584296 non-coding upstream 70515 25278734 ~ 25280330 (+)
G2216088 NA non-coding upstream 162997 25133633 ~ 25187848 (+)
G2216096 NA non-coding upstream 197372 25153092 ~ 25153473 (+)
G2216073 NA non-coding upstream 209804 25114519 ~ 25141041 (+)
LOC110521610 NA non-coding downstream 326482 25682300 ~ 25687956 (+)
G2217031 NA non-coding downstream 543272 25899224 ~ 25899854 (+)
G2217047 NA non-coding downstream 561024 25916976 ~ 25917700 (+)
LOC110521625 mettl13 non-coding downstream 957528 26312180 ~ 26314731 (+)
G2216024 LOC106584303 other upstream 237247 25030998 ~ 25174051 (+)
LOC110521578 LOC106584313 other upstream 1765265 23510569 ~ 23610545 (+)
G2213751 NA other upstream 2001628 23348999 ~ 23349217 (+)
G2212563 LOC106584318 other upstream 2140329 23208775 ~ 23210516 (+)
G2212455 LOC106584324 other upstream 2298987 23050488 ~ 23051858 (+)
G2216357 NA other downstream 8300 25364252 ~ 25373610 (+)
LOC110521611 LOC106584283 other downstream 332139 25688091 ~ 25825503 (+)
G2217159 LOC106584278 other downstream 771102 26127054 ~ 26133044 (+)
G2217442 NA other downstream 1251571 26607523 ~ 26607943 (+)

Expression


Co-expression Network