G2217392


Basic Information

Item Value
gene id G2217392
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26749541 ~ 26757367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2536296
GCCAGCTATTACCGGCTAGtggaaaccctgacacacacgcgcacgcgcacgcgcacacacacacacacacacacacacacacacacacggacacacacggacacacacttcTGCTCTTTCCTCCTCCTTGCTGCTCTTCTCCATTTACAGTAAATAGTGTGTGTCTAtatctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagatcacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagaagcagggcggtctaaaggagatcacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccACAAAAAGAAGGTGTTTCTAtatcctgtctctttgtgtctgttctgtagggtatagcagcagcagggcggtctaaaggagatcacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacaaacagaaggtgtttctatatcctgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacgaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagatcacaaacagaaggtgtttctatatcctgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagatcacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagatcacaaacagaaggtgtttctatatcctgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagatcacaaacagaaggtgtttctatatcctgtctctttgtgtctgttctgtagggtatagcagcagcagggcggtctaaaggagaccacgaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagatcacaaacagaaggtgtttctatatcctgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagatcacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagatcacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacgaacagaaggtgtttctaactgtctctgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacaaacagaaggtgtttctatatcctgtctctttgtgtctgatctgtagggcatagcagcagcagggcggtctaaaggagatcacaaacagaaggtgtttccaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacaaacagaaggtgtttctatatcctgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacaaacagaaggtgtttctaactgtctctttgtatctgttctgtagggcatagcagcagcagggcggtctaaaggagatcacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtaggaaatagcagcagcagggcggtctaaaggagaccacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtccaaaggagaccacaaacagaaggtgtttctaactgtctctttatgtctgttctgtagggcatagcagcagcagggcggtcgaaaggagaccacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtccaaaggagaccacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagggcggtctaaaggagaccACAAACAGGAGGTGTTTCTAcatcctgtctctttgtgtctgttctgtagggcatagcagcagcagggaggtctaaaggagatcacaaacagaaggtgtttctaactgtctctttgtgtctgttctgtagggcatagcagcagcagg

Function

NR:

description
Disabled

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2536296 True 2793 lncRNA 0.48 2 26749541 26757367

Neighbor

gene id symbol gene type direction distance location
oma1 oma1 coding upstream 247989 26477035 ~ 26501552 (+)
LOC110521630 mysm1 coding upstream 271140 26457805 ~ 26478401 (+)
LOC110521629 LOC106584269 coding upstream 291822 26446447 ~ 26457719 (+)
LOC110522769 LOC106613976 coding upstream 391050 26315974 ~ 26358491 (+)
LOC110521625 mettl13 coding upstream 434824 26312180 ~ 26314731 (+)
LOC110521632 LOC106584206 coding downstream 38835 26796202 ~ 26822332 (+)
plpp3 plpp3 coding downstream 90056 26847423 ~ 26906418 (+)
usp24 usp24 coding downstream 266571 27023938 ~ 27076744 (+)
dhcr24 dhcr24 coding downstream 342450 27099817 ~ 27122682 (+)
LOC110521639 tmm27 coding downstream 385638 27143005 ~ 27145888 (+)
LOC110521633 LOC106584207 non-coding upstream 2055 26695809 ~ 26795605 (+)
G2217502 NA non-coding upstream 19658 26729534 ~ 26729883 (+)
G2217476 NA non-coding upstream 77817 26671503 ~ 26671724 (+)
G2217304 NA non-coding upstream 350927 26373801 ~ 26398614 (+)
G2217315 NA non-coding upstream 358381 26390909 ~ 26391160 (+)
G2217517 NA non-coding downstream 12028 26769395 ~ 26770266 (+)
G2217518 NA non-coding downstream 12684 26770051 ~ 26771094 (+)
G2217527 NA non-coding downstream 56691 26814058 ~ 26815608 (+)
G2217540 NA non-coding downstream 83784 26841151 ~ 26845834 (+)
G2217567 NA non-coding downstream 156096 26913463 ~ 26913791 (+)
G2217442 NA other upstream 141598 26607523 ~ 26607943 (+)
G2217159 LOC106584278 other upstream 616497 26127054 ~ 26133044 (+)
LOC110521611 LOC106584283 other upstream 937235 25688091 ~ 25825503 (+)
LOC110522768 LOC106584287 other upstream 1161026 25566527 ~ 25590680 (+)
G2216357 NA other upstream 1375931 25364252 ~ 25373610 (+)
G2218483 NA other downstream 468007 27225374 ~ 27226305 (+)
LOC110521646 LOC106584219 other downstream 740510 27497328 ~ 27519290 (+)
LOC110521656 LOC106584103 other downstream 1080541 27823914 ~ 27844041 (+)
fip1l1a fip1l1 other downstream 1536528 28260830 ~ 28307538 (+)
G2219989 LOC105940532 other downstream 1790171 28547538 ~ 28548084 (+)

Expression


Co-expression Network