G2218316 (LOC106584215)


Basic Information

Item Value
gene id G2218316
gene name LOC106584215
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27186575 ~ 27196779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2537309
GAGAACATTTATTGAAAACTTTAGAGCAGTCAAAAGGGAAAAAATATGAGTTAAGTCAGCAAAGCAACTGTTTAACAGAAGGAACACCCCTTTATCCCAGGCACAGTAAGGAACGTGTAGTGACAGCAAAGTTACTTATATTCTATAAAAGGTCATTTTTCAATAGACCAGATACTGTGCCAAGTTTGGATGTGTGTAAACACTTTTCGAAAACTGAATGGTCCCTCTGGCTATCATTCTTTACACCTACCCCTCCTATGCCTTTTCTGCCTGGTACTGTTGGTGCAGCATTAAGACATCGGACTGGGACACCCTGTTCCAGCCCTCACTGTGTACGTGGTACAGGTTGACCTGTCCTCCACTGTAGGCGTCGCGGTAAGTGGCCTGGTAGATGGCCCTGCAACCCAGATCACAGGCCTCCTCCACAGTCAGGTCCTTCTGCTTCAGACCGCTGTCCACGATGCCATACGCGTACATGGAGCCAGAGCCCACAGCAAACAGGTCCCCGCAGACACGGTTCCCCTCAGAGTCCACGTAGTAGAGGCCTGGTCCAGTCTTGTCCCAGCCACACACCATGGTTCCCATGCTGAGGCCCATGCCTTTGTACTGGTACACCATGTTGGCCAGTAGCTTGGAGGCGGCTGCCACAGAGATGCGTTCCTTGTTGCGGAGCTCGTAGACGCGGCACTGGCGGGCCAGCAGGCGCTCCCAGAAGCTGCAGTCAGCAGCCCCTCCAGCCATTGTGCCCAACAGGTAGGGGTTGATCTCTATCACCTTCTTCACTGTCTGGGAGGCGATGTAGGCGCCTGCTGTAGCCCTGGAGTCCACCGCCACGATCACACCATGCTGGAATTTGAAGGCTAATGTGGTTGTGCCATGAAGGAATTGTATCTTTCTTTCTGGCCCATCTCCGTCAGAGCAGGCGGTTCTCACAGCGAAAGAGAGGTTATCTCCCCCTACAGACTCCAAACCCAACTCTGTTTCATACAAACTACTGCTGAAGCCACGACACTTGCGACCATAGTTTGAAAAGTCTACTGACTCACTCTGCAACACATTAGCAAGAGCCATCTTTAAACTAAGAATGATGAA

Function

NR:

description
proteasome subunit beta type-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2537309 True 1092 lncRNA 0.51 3 27186575 27196779

Neighbor

gene id symbol gene type direction distance location
LOC110522772 NA coding upstream 29903 27147352 ~ 27156672 (+)
LOC110521639 tmm27 coding upstream 40687 27143005 ~ 27145888 (+)
dhcr24 dhcr24 coding upstream 63893 27099817 ~ 27122682 (+)
usp24 usp24 coding upstream 109831 27023938 ~ 27076744 (+)
plpp3 plpp3 coding upstream 280157 26847423 ~ 26906418 (+)
LOC110521646 LOC106584219 coding downstream 300549 27497328 ~ 27519290 (+)
LOC110521647 LOC106560251 coding downstream 324826 27521605 ~ 27537511 (+)
LOC110522774 NA coding downstream 343241 27540020 ~ 27540985 (+)
LOC118945773 nek1 coding downstream 371038 27567817 ~ 27571386 (+)
LOC118945810 nek1 coding downstream 374935 27571714 ~ 27581860 (+)
G2218192 NA non-coding upstream 214007 26972265 ~ 26972568 (+)
G2217601 NA non-coding upstream 220430 26965652 ~ 26966145 (+)
G2217600 NA non-coding upstream 221671 26964686 ~ 26964904 (+)
G2217598 NA non-coding upstream 222808 26963475 ~ 26963767 (+)
G2218332 NA non-coding downstream 13882 27210661 ~ 27210860 (+)
G2218482 NA non-coding downstream 26091 27222870 ~ 27225123 (+)
G2218484 NA non-coding downstream 29584 27226363 ~ 27227059 (+)
G2218507 NA non-coding downstream 46813 27243592 ~ 27243792 (+)
G2218553 NA non-coding downstream 81461 27278240 ~ 27278449 (+)
LOC110521633 LOC106584207 other upstream 434111 26695809 ~ 26795605 (+)
G2217442 NA other upstream 578632 26607523 ~ 26607943 (+)
G2217159 LOC106584278 other upstream 1053531 26127054 ~ 26133044 (+)
LOC110521611 LOC106584283 other upstream 1374269 25688091 ~ 25825503 (+)
LOC110522768 LOC106584287 other upstream 1598060 25566527 ~ 25590680 (+)
G2218483 NA other downstream 28595 27225374 ~ 27226305 (+)
LOC110521656 LOC106584103 other downstream 641129 27823914 ~ 27844041 (+)
fip1l1a fip1l1 other downstream 1097116 28260830 ~ 28307538 (+)
G2219989 LOC105940532 other downstream 1350759 28547538 ~ 28548084 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015754 psmb5 coding NC_007113.7 CM002886.2 38373272 ~ 38392575 (+)
grasscarp (Ctenopharyngodon idella) CI01000004_16221780_16232426 PSMB5 coding CI01000004 null 16221780 ~ 16232940 (+)