G2218482


Basic Information

Item Value
gene id G2218482
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27222870 ~ 27225123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2537500
CCATAAGGAGTCTCTAGAGTACACTGAGACAAATAAAGCACCCcaagccaaaccctcccctaacctggacgacgctgggccaattacgGCCTGTTGTTTTACAGCTCAGGATCGAACTgaatctgtagtgacgcctctagcactgcgatgtagtgccttagGCAGCTGGGCCACTTGGGAGTCCCCCAAAGAAGAGCTACTACTAGAACAGATCTCTCCTTTCGGGGCCCCTCCTAAATGTCTGTCTGTCCAAGGCCGATCATATGGACTGGCTTATGCTGGTTAACTTATGGTGGTGGAAAAtatactcaattgtcatacttgagtaaaagtaaaaagtaaatgctatacatcaaattcattaagcaaaccagaaggcacactccaacactcaagaCTTAATTTACAAATGCAGTATTTCTGTTtattgagtccaccagatcagagacagtagagatgacaaTGTGTTATATTAataggtgtgtgaattggaccatattgcTGTCCTGCCTGAGTATTCGAAATgcacatattttctttaggaatgtagtggagtaaaagttgtcaaaaatataaatagtcaagtaaagtgcagataccccaaaaatctacataagtagtacttcaactgtaaagtctggtggaggaggaatattggtCTGCAACTTTTTTTCATGGTTCGCgctaggcccctttgttccaATGATGGGTAATATTagagctacagcatacaatgacatactagacgattctgttcttccaactttgtggcaacagtttggggaaggccctttcctgtttcagcatgactatGCCCCTGTGCataaagcaaggtccatacagaaatggtttgtcgagatcggtgtggaagaacttgactggtctgcgcagatccctgacctcaaccctattgaacacctttgggatgaattgaattggaacaccgactgcgagccaggtctaatcgcccaacatcagtgatcgacttcactaatgctcttgtggctgaattgaaGCAAGTCCATCCaacaatgttctaacatctagtggaaagccttcccagaaaagtggaggctgttatagcagcaaaggggtgacctactccatattaatgcccatgattttggaatgagattatgaaatagcaggtgtccacatacctttggtcatgtattgtatgtgtgtgaatgAGGCAGATATGATTGTGTTCTGTGAAACAAACTAATGCCCGACCATACTGTGATGAACATGTAGATACAGTACTTCACTGTTGCTCTCTGATTTTCAGATAAGGACATCGTGTTATGGTGACGTTAGAGCTGGTACTATGTTGGGTAATTTATAGGAACTAAACAGCAGTATAATTTCTAGTATTTCTCCCCTCCCCCCTTGGTACTTCATTGCCAACAAGCACTGTGACCAGAGTAATAAATGTGACATTTTGAATTGCTCTCAACCCTACACCTTGTAATAATATTTGTGTTTAGTCAAACCCTCTTAATATTCCCACGGGCAACCATTGTAACCAAAGATTGAGTCAATGCGTGGTCTAAGCTATGCATTAAACCATAGCCTGTAAACTGTCCTTTCATTAAAAAAATAGTACATGTGATTGCCATATTATTTCAAGATTATTGCTATTATTTGAAACAGCGGAGTATTTAACTCTCTATCCAATGTTATCACCAGTGCCAGAACTCTCAGAAATAAAAGTGTCAAAGAGCTCTATTCAGTCCCTATCAGTgtacagcgtgattgaaatttaaaggcaatgttcctgcaTTCTCGGacactgcattcacggtaaacgctgcatacaTCCTCAAtgggaaatgacctttacatttctatcacaCAATTTGTAACGCTTAAGCGACTGAATAAAGCCCAAAGTCTCTGTTATCAACTCATTAGATACAGTATCAGCTACCCATTATAACAATTTTCCAATTCTGCAatgtggtctcagagcattttatattattctgtaagtaaatccgagacactccatttagtatgatatgttatgtttcgtaTGGTACGTATACATTTTTTGGTCTATGAGACCAGTATGGATTATTATGTATTAATTATCTACCCCAAACTAGAAGGCAAAAGCCCACCTGACCTGTTTTTAGCGATAAACACATAGTCTGAAATTATAGATTGAATTGGTAACGTGCAAATGGCCTATTTGAGAAAACATAACAATGATAACCTTGTATTTGGTTTTCTGATCTGCTGCCATTTGTAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2537500 True 2254 lncRNA 0.40 1 27222870 27225123

Neighbor

gene id symbol gene type direction distance location
LOC110522772 NA coding upstream 66198 27147352 ~ 27156672 (+)
LOC110521639 tmm27 coding upstream 76982 27143005 ~ 27145888 (+)
dhcr24 dhcr24 coding upstream 100188 27099817 ~ 27122682 (+)
usp24 usp24 coding upstream 146126 27023938 ~ 27076744 (+)
plpp3 plpp3 coding upstream 316452 26847423 ~ 26906418 (+)
LOC110521646 LOC106584219 coding downstream 272205 27497328 ~ 27519290 (+)
LOC110521647 LOC106560251 coding downstream 296482 27521605 ~ 27537511 (+)
LOC110522774 NA coding downstream 314897 27540020 ~ 27540985 (+)
LOC118945773 nek1 coding downstream 342694 27567817 ~ 27571386 (+)
LOC118945810 nek1 coding downstream 346591 27571714 ~ 27581860 (+)
G2218332 NA non-coding upstream 12010 27210661 ~ 27210860 (+)
G2218316 LOC106584215 non-coding upstream 26091 27186575 ~ 27196779 (+)
G2218192 NA non-coding upstream 250302 26972265 ~ 26972568 (+)
G2217601 NA non-coding upstream 256725 26965652 ~ 26966145 (+)
G2218484 NA non-coding downstream 1240 27226363 ~ 27227059 (+)
G2218507 NA non-coding downstream 18469 27243592 ~ 27243792 (+)
G2218553 NA non-coding downstream 53117 27278240 ~ 27278449 (+)
G2218801 NA non-coding downstream 275180 27500303 ~ 27501159 (+)
LOC110521633 LOC106584207 other upstream 470406 26695809 ~ 26795605 (+)
G2217442 NA other upstream 614927 26607523 ~ 26607943 (+)
G2217159 LOC106584278 other upstream 1089826 26127054 ~ 26133044 (+)
LOC110521611 LOC106584283 other upstream 1410564 25688091 ~ 25825503 (+)
LOC110522768 LOC106584287 other upstream 1634355 25566527 ~ 25590680 (+)
G2218483 NA other downstream 251 27225374 ~ 27226305 (+)
LOC110521656 LOC106584103 other downstream 612785 27823914 ~ 27844041 (+)
fip1l1a fip1l1 other downstream 1068772 28260830 ~ 28307538 (+)
G2219989 LOC105940532 other downstream 1322415 28547538 ~ 28548084 (+)

Expression


Co-expression Network