G2218801


Basic Information

Item Value
gene id G2218801
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27500303 ~ 27501159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2537851
agactaacagtgaaatgcttccttacaggcccttcccaacaatgcagagagaaacaacagatgtagactaacagtgaaatgcttacttacaggcccttcccaacaatgcagagagaaacaacagatgtagactaacagtgaaatgcttacttacaggcccttcccaacaatgcagagagaaacaacagatgtagactaacagtgaaatgcttacttacaggcccttcccaacaatgcagagagaaacaacagatgtagactaacagtgaaatgcttacttacaggcccttcccaacaatgcagagagaaacaacaggtgtagactaacagtgaaatgcttactttcggaacccttcccaacaatgcagagagaaacaacagatgtagactaacagtgaaatgcttactt

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2537851 True 409 lncRNA 0.42 2 27500303 27501159

Neighbor

gene id symbol gene type direction distance location
LOC110522772 NA coding upstream 343631 27147352 ~ 27156672 (+)
LOC110521639 tmm27 coding upstream 354415 27143005 ~ 27145888 (+)
dhcr24 dhcr24 coding upstream 377621 27099817 ~ 27122682 (+)
usp24 usp24 coding upstream 423559 27023938 ~ 27076744 (+)
plpp3 plpp3 coding upstream 593885 26847423 ~ 26906418 (+)
LOC110521647 LOC106560251 coding downstream 20446 27521605 ~ 27537511 (+)
LOC110522774 NA coding downstream 38861 27540020 ~ 27540985 (+)
LOC118945773 nek1 coding downstream 66658 27567817 ~ 27571386 (+)
LOC118945810 nek1 coding downstream 70555 27571714 ~ 27581860 (+)
LOC110521651 LOC106584225 coding downstream 107285 27608444 ~ 27662348 (+)
G2218553 NA non-coding upstream 221854 27278240 ~ 27278449 (+)
G2218507 NA non-coding upstream 256511 27243592 ~ 27243792 (+)
G2218484 NA non-coding upstream 273244 27226363 ~ 27227059 (+)
G2218482 NA non-coding upstream 275180 27222870 ~ 27225123 (+)
G2218332 NA non-coding upstream 289443 27210661 ~ 27210860 (+)
LOC110521646 LOC106584219 non-coding downstream 13418 27497328 ~ 27519290 (+)
G2218823 LOC106584220 non-coding downstream 62652 27563811 ~ 27565177 (+)
G2218907 LOC106560254 non-coding downstream 189153 27690312 ~ 27692184 (+)
G2218953 NA non-coding downstream 246914 27748073 ~ 27754271 (+)
G2219002 NA non-coding downstream 308505 27809664 ~ 27810344 (+)
G2218483 NA other upstream 273998 27225374 ~ 27226305 (+)
LOC110521633 LOC106584207 other upstream 747839 26695809 ~ 26795605 (+)
G2217442 NA other upstream 892360 26607523 ~ 26607943 (+)
G2217159 LOC106584278 other upstream 1367259 26127054 ~ 26133044 (+)
LOC110521611 LOC106584283 other upstream 1687997 25688091 ~ 25825503 (+)
LOC110521656 LOC106584103 other downstream 336749 27823914 ~ 27844041 (+)
fip1l1a fip1l1 other downstream 792736 28260830 ~ 28307538 (+)
G2219989 LOC105940532 other downstream 1046379 28547538 ~ 28548084 (+)
G2219991 NA other downstream 1047870 28549029 ~ 28549478 (+)
G2220253 NA other downstream 1520427 29021586 ~ 29021882 (+)

Expression


Co-expression Network