G2218968


Basic Information

Item Value
gene id G2218968
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27857137 ~ 27858979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2538042
GATCAAGTTTTTATTTATCCAGAGAGAAGGCTTGGTATGTGAGATGACAAAAAAAGTATATTGGTAATGCATCCCTACAATTTTCCAGGAAAATCTGTTAAATTAAGATCAGCATTCAAATGCAACAGACAAGTTCTGTGAGGAATGAGTACAGTGATCGTTTACAATGTGCCATGACAAGTTTCCTGCAACACTGACATCAAGCAGTGCCTTTTCAGAAGCATAAGCAGAGCCTTAATGGCAGCAGTTTCCCCTCAGAACACAGGGCTGTGGCACACCATCAGTGCAGCTGTGTGCAGCCAACATGGATAAACACAGGCCTcagtttcccctcatgtctttttAGAGGAGCCTGTTCCAGGGCTAACATGGAGATCACAGTGGAGAGAAGGAATGCATAGGGCTGTGGCAGTCCAACAGGAAGCAGAATCTATGCTAGCTAGCGCCTTTAACCAGTTCCAATTTACTGACCCACAATCCTCACCAGGCAGGCCAATCTTGGGGAAATGTTAAAGTTCGTGTGACAGGGTCATTAGTGACTATCAGCTATCTTTCTCACATCAGCTTCATACATCCTATTCGGATTAACAGTGCAACAAAAGTACAAGGGGAAAATACTGGTTTTACATTTTCTAAAATATATACAGAGTAAAATAAGTTAATGTTTACATAATGAGTTGTAGCCAGTCTGCACTTCTGTATACAAGAATATATACCACACAGCCTAAAGTCTCTACAGGCAGCTACTTATTTGGTTACAGAGTGAGTTTCATTAGAAGACCTGCTGAAGATGATGCTAGTCTCCAACGCAGGTGAATAAACAGATCAATTTATATTTTTCCAGTCCCTAAGGGAAGGGGGACATAGCTCCCCTAGGATTACAATGACATGTTAAATACCCTAACATTTACAACCTAGGATGTTAGCTCTAATAAAAAAtagtacatttctcaaaaaatatTATTGCAGTGCTTCTCTCTTTCAAGCATGCTTTTGAaaactgtttttgtgtttgtttatgaATCTTGACAAGGACTGCCCTGTCCTCTCACAAAGCCATCCGGTTTCCTTCCGGACCGACTCCCAAGGCGCCCATGCTCCAACTTCTCTGCTACAAGAACACCACATCTCCCTGACCGAACCTCAAACCCCAACCAGTCTCCTGACTGGGGCTGAGGAGGCAACTGGCCAATATGGGAGACCCATCAGGTAATTTCCGCCAAAACGCTTCCAGTTTAGCATCATCATCCCCATTGTCTCCTTCCTACTTCTCGCTCCTGGGCCAGTCTTCACCAGTCACATAATACCCCAACTTATTGCAGCTGAATTTGGCAAGGTGGCTTATTCTGGGAAAACAGATACGAGCTTTTAAAGTAttttatatatgtaatatatattaaTATGAGTCACAGCTATTCCCACACATCCTTTAGCCCTTATTAGGTGGAGTCTCTTCTGTCCTCCCCAAACACACGTCACTGTCTCCCCAGCCTCCAGAGCAGATGGAAGCTGTGAGTGGTACAGGAGAGGTCTACTGCAGTCCAGTCTAGTTTAgactagtccagtccagtctttGGGCCTGAAGGCTCACAGTCCAGTGCTGACCAATGTGGTCTGGGGGGCCTGGCAGGTTTGGGCCTGGCTCAGAGCCTCTCTGATCTGCAGGTTGAGCTCCATGAGGCGCCCGCTGGCCTGGGACAGGTCCCTGCTGGGCCCCACCACGGCCAGGCAGCCTGTCTGGCCCAGCGTCTGGTGACGGAAGTAGATGTGCAGGAGTGTCTGGACCGCGTCGTCTGACTCGTTCCCAAAGATGTCGTTAGGCC
>TU2538043
GATCAAGTTTTTATTTATCCAGAGAGAAGGCTTGGTATGTGAGATGACAAAAAAAGTATATTGGTAATGCATCCCTACAATTTTCCAGGAAAATCTGTTAAATTAAGATCAGCATTCAAATGCAACAGACAAGTTCTGTGAGGAATGAGTACAGTGATCGTTTACAATGTGCCATGACAAGTTTCCTGCAACACTGACATCAAGCAGTGCCTTTTCAGAAGCATAAGCAGAGCCTTAATGGCAGCAGTTTCCCCTCAGAACACAGGGCTGTGGCACACCATCAGTGCAGCTGTGTGCAGCCAACATGGATAAACACAGGCCTcagtttcccctcatgtctttttAGAGGAGCCTGTTCCAGGGCTAACATGGAGATCACAGTGGAGAGAAGGAATGCATAGGGCTGTGGCAGTCCAACAGGAAGCAGAATCTATGCTAGCTAGCGCCTTTAACCAGTTCCAATTTACTGACCCACAATCCTCACCAGGCAGGCCAATCTTGGGGAAATGTTAAAGTTCGTGTGACAGGGTCATTAGTGACTATCAGCTATCTTTCTCACATCAGCTTCATACATCCTATTCGGATTAACAGTGCAACAAAAGTACAAGGGGAAAATACTGGTTTTACATTTTCTAAAATATATACAGAGTAAAATAAGTTAATGTTTACATAATGAGTTGTAGCCAGTCTGCACTTCTGTATACAAGAATATATACCACACAGCCTAAAGTCTCTACAGGCAGCTACTTATTTGGTTACAGAGTGAGTTTCATTAGAAGACCTGCTGAAGATGATGCTAGTCTCCAACGCAGGTGAATAAACAGATCAATTTATATTTTTCCAGTCCCTAAGGGAAGGGGGACATAGCTCCCCTAGGATTACAATGACATGTTAAATACCCTAACATTTACAACCTAGGATGTTAGCTCTAATAAAAAAtagtacatttctcaaaaaatatTATTGCAGTGCTTCTCTCTTTCAAGCATGCTTTTGAaaactgtttttgtgtttgtttatgaATCTTGACAAGGACTGCCCTGTCCTCTTCCGGACCGACTCCCAAGGCGCCCATGCTCCAACTTCTCTGCTACAAGAACACCACATCTCCCTGACCGAACCTCAAACCCCAACCAGTCTCCTGACTGGGGCTGAGGAGGCAACTGGCCAATATGGGAGACCCATCAGGTAATTTCCGCCAAAACGCTTCCAGTTTAGCATCATCATCCCCATTGTCTCCTTCCTACTTCTCGCTCCTGGGCCAGTCTTCACCAGTCACATAATACCCCAACTTATTGCAGCTGAATTTGGCAAGGTGGCTTATTCTGGGAAAACAGATACGAGCTTTTAAAGTAttttatatatgtaatatatattaaTATGAGTCACAGCTATTCCCACACATCCTTTAGCCCTTATTAGGTGGAGTCTCTTCTGTCCTCCCCAAACACACGTCACTGTCTCCCCAGCCTCCAGAGCAGATGGAAGCTGTGAGTGGTACAGGAGAGGTCTACTGCagtccagtccagtctttGGGCCTGAAGGCTCACAGTCCAGTGCTGACCAATGTGGTCTGGGGGGCCTGGCAGGTTTGGGCCTGGCTCAGAGCCTCTCTGATCTGCAGGTTGAGCTCCATGAGGCGCCCGCTGGCCTGGGACAGGTCCCTGCTGGGCCCCACCACGGCCAGGCAGCCTGTCTGGCCCAGCGTCTGGTGACGGAAGTAGATGTGCAGGAGTGTCTGGACCGCGTCGTCTGACTCGTTCCCAAAGATGTCGTTAGGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2538042 False 1823 lncRNA 0.46 2 27857137 27858979
TU2538043 True 1782 lncRNA 0.46 4 27857137 27858979

Neighbor

gene id symbol gene type direction distance location
LOC100136720 zar1 coding upstream 207 27855364 ~ 27856930 (+)
LOC110521658 LOC106584105 coding upstream 2550 27851805 ~ 27855190 (+)
LOC110521656 LOC106584103 coding upstream 13096 27823914 ~ 27844041 (+)
LOC110522775 NA coding upstream 34269 27801294 ~ 27822868 (+)
LOC110521654 cbr4 coding upstream 171867 27672920 ~ 27685270 (+)
LOC110521659 LOC106584107 coding downstream 103928 27962907 ~ 27971343 (+)
spata18 spata18 coding downstream 131536 27990515 ~ 27997891 (+)
LOC110521663 rasl11b coding downstream 234388 28093367 ~ 28096082 (+)
fip1l1a fip1l1 coding downstream 401851 28260830 ~ 28307538 (+)
gsx2 gsx2 coding downstream 672976 28531955 ~ 28533455 (+)
G2219026 NA non-coding upstream 6172 27850636 ~ 27850965 (+)
G2219006 NA non-coding upstream 40217 27816721 ~ 27816920 (+)
G2219005 NA non-coding upstream 41370 27815522 ~ 27815767 (+)
G2219003 NA non-coding upstream 45335 27811564 ~ 27811802 (+)
G2219070 NA non-coding downstream 89534 27948513 ~ 27948725 (+)
G2219075 NA non-coding downstream 124652 27983631 ~ 27986339 (+)
G2219228 NA non-coding downstream 374954 28233933 ~ 28247795 (+)
G2219302 lnx1 non-coding downstream 476960 28335939 ~ 28337968 (+)
G2219327 NA non-coding downstream 511668 28370647 ~ 28371013 (+)
LOC110521646 LOC106584219 other upstream 354457 27497328 ~ 27519290 (+)
G2218483 NA other upstream 630832 27225374 ~ 27226305 (+)
LOC110521633 LOC106584207 other upstream 1104673 26695809 ~ 26795605 (+)
G2217442 NA other upstream 1249194 26607523 ~ 26607943 (+)
G2219989 LOC105940532 other downstream 688559 28547538 ~ 28548084 (+)
G2219991 NA other downstream 690050 28549029 ~ 28549478 (+)
G2220253 NA other downstream 1162607 29021586 ~ 29021882 (+)
LOC110521703 LOC106584150 other downstream 3004845 30863624 ~ 30866524 (+)

Expression


Co-expression Network