G2219964


Basic Information

Item Value
gene id G2219964
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 28514969 ~ 28539699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2539138
tgCTTCCTGCTGCagatgagcaacccagaactgtgtgtgtttctttcaaaaagcatcttgcttcaatcagtttattccagttcagaataaaagTTACTATTTgtaacagttccaacctagacttgtTTTCAACAATTTCTACAGTAAAATTTAACATTTTTCATCTTCATCTGTACTGTTTCTTGGGGTTGCACAAtcagtagctagttagcttgctttGGCTAACGTGAGCTATTAGCTGTGTAACATTACAAAGCCAGGGGATTatttgaaagagaaactcacatctacTACTCAGAGAGAactcccttatttctgcttatcgtcacctgttataaaatgacaacaatgccttGCTAGTTGACTGACTTTTCCACGTTCGAAATACTGTTTCCTGAAGTATTCTGCCCTGTTCCGAAAGAACTCCCTGGGTTTACCGTCATGTTGTGCCTGGATGTTTGGTCAGGACATGTCATTTTAATTTGTTCGTTTTGAAAGACTTATTACTAAGCACTTCcccacacaaaacacattgtgggTGCTTCTCGTTATTTCTCAAAGTTAGTATGAAAGAGACAAAGTAATCACTGTATTTGCATTTCATGAcgattgagctcagtcagaacaTGTGGCTAGCATGAGTCCATTTCATGAAAGCGGTGAGTTATTGAGAGTGATAGGGGAACCATTTTAGGATCTCTGAAGAACCATAAATGGGATGGCTCTTTTAAGAACTATACAACAATCCCAACACAGAAATGTTTTGGACCTCCAAACACCGTAATTTAATAGCCCCTACTGGCCGATAGCCCAGTTATTCCTTTAGTGTCAGTCACGTGACTAGGGTCAGGTATGCACTCATAAATGCACTCCAGGTTGTGGCCTCACTTGAAGGATATATAGCAGAGACATACATAAACGTCCTAAACATTATCGCTGGGGAAATTTGCTCAGTAATGGAT

Function

NR:

description
PREDICTED: protein FAM177A1 isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2539138 True 962 lncRNA 0.40 2 28514969 28539699

Neighbor

gene id symbol gene type direction distance location
fip1l1a fip1l1 coding upstream 207431 28260830 ~ 28307538 (+)
LOC110521663 rasl11b coding upstream 418887 28093367 ~ 28096082 (+)
spata18 spata18 coding upstream 517078 27990515 ~ 27997891 (+)
LOC110521659 LOC106584107 coding upstream 543626 27962907 ~ 27971343 (+)
LOC100136720 zar1 coding upstream 658039 27855364 ~ 27856930 (+)
pdgfra pdgfra coding downstream 15684 28555383 ~ 28576642 (+)
LOC110521672 kit coding downstream 88217 28627916 ~ 28667914 (+)
srd5a3 srd5a3 coding downstream 225664 28765363 ~ 28768625 (+)
tmem165 LOC106584122 coding downstream 229533 28769232 ~ 28774166 (+)
exoc1 exoc1 coding downstream 371866 28911565 ~ 28925770 (+)
G2219327 NA non-coding upstream 143956 28370647 ~ 28371013 (+)
G2219302 lnx1 non-coding upstream 177001 28335939 ~ 28337968 (+)
G2219228 NA non-coding upstream 267174 28233933 ~ 28247795 (+)
G2219075 NA non-coding upstream 528630 27983631 ~ 27986339 (+)
G2219070 NA non-coding upstream 566244 27948513 ~ 27948725 (+)
G2219983 NA non-coding downstream 1466 28541165 ~ 28541401 (+)
G2219984 NA non-coding downstream 1889 28541588 ~ 28541906 (+)
G2219990 NA non-coding downstream 8701 28548400 ~ 28548917 (+)
G2220025 NA non-coding downstream 62936 28602635 ~ 28602844 (+)
G2220026 NA non-coding downstream 66570 28606269 ~ 28606599 (+)
LOC110521656 LOC106584103 other upstream 671271 27823914 ~ 27844041 (+)
LOC110521646 LOC106584219 other upstream 1012289 27497328 ~ 27519290 (+)
G2218483 NA other upstream 1288664 27225374 ~ 27226305 (+)
LOC110521633 LOC106584207 other upstream 1762505 26695809 ~ 26795605 (+)
G2219989 LOC105940532 other downstream 7839 28547538 ~ 28548084 (+)
G2219991 NA other downstream 9330 28549029 ~ 28549478 (+)
G2220253 NA other downstream 481887 29021586 ~ 29021882 (+)
LOC110521703 LOC106584150 other downstream 2324125 30863624 ~ 30866524 (+)
G2225948 NA other downstream 5032441 33572140 ~ 33604894 (+)

Expression


Co-expression Network