G2219990


Basic Information

Item Value
gene id G2219990
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 28548400 ~ 28548917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2539164
ATTAAACCATCCAAGTCACGCAGCATCTCGATTGTGAAGGGAGTACTCTCTGACCTGAAATTCTTCATCGGAGATGACCAAATCCCAACAGTGTCTGAGCAGCCGGTAAAAAGCCTTGGAAGGTGGTATGATGCAAGCCTGAAGGACAAAGACCAGGTGCAACAGCTGCGCAAAGACAtcagtagtagcctacagttcATCGACAACACCCAGCTACCTGGAAAGTTAAAGGCCTGGTGTCTGCAGTTTGGTCTCCTACCCCGGGTGTTGTGGCCCTTAGCAGTGTATGAGGTTCCAATctcaacagtggagaagatggaaagaggagTCACAGGCTACTTAAAGAAGTGGCTCGGAGTTCCACGATGCCTTACCACCATAGGCCTCTATGGAGATGGTGTCCTCAAGCTGCCCCTCACCAGTCTAACAGAGGAATTCAAGTGTTCAAAAACCAGGCTCCAGATGACACTGAATGAATCTCGAGACCCAGTGGTGAGCAACAACGCGCCGACCTTGGC

Function

NR:

description
uncharacterized protein LOC109910184

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2539164 True 518 lncRNA 0.50 1 28548400 28548917

Neighbor

gene id symbol gene type direction distance location
gsx2 gsx2 coding upstream 14945 28531955 ~ 28533455 (+)
fip1l1a fip1l1 coding upstream 240862 28260830 ~ 28307538 (+)
LOC110521663 rasl11b coding upstream 452318 28093367 ~ 28096082 (+)
spata18 spata18 coding upstream 550509 27990515 ~ 27997891 (+)
LOC110521659 LOC106584107 coding upstream 577057 27962907 ~ 27971343 (+)
pdgfra pdgfra coding downstream 6466 28555383 ~ 28576642 (+)
LOC110521672 kit coding downstream 78999 28627916 ~ 28667914 (+)
srd5a3 srd5a3 coding downstream 216446 28765363 ~ 28768625 (+)
tmem165 LOC106584122 coding downstream 220315 28769232 ~ 28774166 (+)
exoc1 exoc1 coding downstream 362648 28911565 ~ 28925770 (+)
G2219984 NA non-coding upstream 6494 28541588 ~ 28541906 (+)
G2219983 NA non-coding upstream 6999 28541165 ~ 28541401 (+)
G2219964 NA non-coding upstream 8701 28514969 ~ 28539699 (+)
G2219327 NA non-coding upstream 177387 28370647 ~ 28371013 (+)
G2219302 lnx1 non-coding upstream 210432 28335939 ~ 28337968 (+)
G2220025 NA non-coding downstream 53718 28602635 ~ 28602844 (+)
G2220026 NA non-coding downstream 57352 28606269 ~ 28606599 (+)
G2220031 NA non-coding downstream 65002 28613919 ~ 28614126 (+)
G2220223 NA non-coding downstream 403166 28952083 ~ 28952436 (+)
G2220224 NA non-coding downstream 403676 28952593 ~ 28953950 (+)
G2219989 LOC105940532 other upstream 316 28547538 ~ 28548084 (+)
LOC110521656 LOC106584103 other upstream 704702 27823914 ~ 27844041 (+)
LOC110521646 LOC106584219 other upstream 1045720 27497328 ~ 27519290 (+)
G2218483 NA other upstream 1322095 27225374 ~ 27226305 (+)
G2219991 NA other downstream 112 28549029 ~ 28549478 (+)
G2220253 NA other downstream 472669 29021586 ~ 29021882 (+)
LOC110521703 LOC106584150 other downstream 2314907 30863624 ~ 30866524 (+)
G2225948 NA other downstream 5023223 33572140 ~ 33604894 (+)
LOC110521757 NA other downstream 6633052 35181902 ~ 35190209 (+)

Expression


Co-expression Network