G2220224


Basic Information

Item Value
gene id G2220224
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 28952593 ~ 28953950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2539415
CATGTACTATAataggcacacacacagttacacacgcACATTTGCAGTTCATTCACAGTGATCGGCTTTGTGTGCGTCAGCCAGTTGAAATGACAAAATGCCACTCTGTTCTCCTCCTGCACTGGCAGATCAGGCTAGGAAACAAAGTATCACTTTGTGCCTCCTTAGGCTCGCAGCAACTGGCACAGCAGCAACTGACACAGCAGGATACCCAGCGTCTCTCCTATCACAGGCTGACAGGCCACCCCTTCCTCACGCCCTTCCCTCAGAGAGACACCTCCACTTAAACATGAACGTGTCTACACACAGTCCCACAGAATGTTCTATATGCATGCAAACATACTGCAGATGCCATGTGCCGACAATCACAACAAATAGCCACTGCGTGCACTTGTGCAGTCTTAACATTTGAAAACAAAAACACACGGTCACATGCAAGCCCTCACTGCATCTGCGCAATGACACCTGACTCCAGGTAATGCCCTAGTTGCACAGTGACAGCAGGCAGGTTGAACGGCCACGCTCACACACACCACTCGCATAGAGATACAGTATctctgcacacagacacaatagcaGCAAGGTAAGACTGCATTCTTACACAGTAACGAACACTATTTCTCTTTAAACATCCATTGTGTCAATTGTAAAGTACATGTCCTGTATGTGTAGTACTGGAGCACAATGGTAGAATGATATAATTACTGTTAGCTTGCTACTGACGGAATTCAACTTGTAGCAGGTTGGTGTAATGCTCATCACCCAAAAAACATTCAATCATATTTGAATGGAACAGCATTTTACATTTCTTCCTGGTAAATGAATAATGCTATACTGTATTGTCCAAGTTTATAGGATGCAAATATGCTTCAGTAGGTAACATTAACAGTTTGCACATGATGTGTCAGCCTCACATCACTGTGCCATTGTGAGATGGCAAGTGTGAAGGGGAAAAAAGGCcaatttgtttagtttttttgttaTTGCATGGCACGGGATGGAAGCCTATTACCTCACTAGTGGTCAGTAGGGTAAGTGTAACCCTGTTGGTCATGTGACTGCTGCTTTGTGTATCTCTACGCTCTGTCCCACCATCCAACCTTGTCTCCTCTGTCTTCTGCTACTCTTCACATCTAGACTTCAATTTAGTCCATCTTCTGTTTGATCCCTTCTATCATCCTCTTTTTCACTCCAACTCCTGCTGTCATTATAGCTGATGTTGTTGCTCTCGGTTTTATAGATGATATATTCTTGCATATGGTAAGACTTGCAGTATGGTGACAGGGAACATCATCTGGCCATCATGTTCCTGTCGATCTCATTGTGACGTCAGCTTCTATGTGTTACGGAAGCAGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2539415 True 1358 lncRNA 0.44 1 28952593 28953950

Neighbor

gene id symbol gene type direction distance location
cep135 cep135 coding upstream 7822 28925986 ~ 28944771 (+)
exoc1 exoc1 coding upstream 26823 28911565 ~ 28925770 (+)
tmem165 LOC106584122 coding upstream 178427 28769232 ~ 28774166 (+)
srd5a3 srd5a3 coding upstream 183968 28765363 ~ 28768625 (+)
LOC110521672 kit coding upstream 284679 28627916 ~ 28667914 (+)
si:dkeyp-117h8.4 LOC106584130 coding downstream 29233 28983183 ~ 28988575 (+)
paics LOC106584129 coding downstream 38658 28992608 ~ 29001492 (+)
LOC100135939 LOC106584136 coding downstream 176447 29130397 ~ 29153704 (+)
LOC110521691 LOC106584140 coding downstream 330951 29284901 ~ 29303940 (+)
LOC110521693 LOC106584143 coding downstream 644600 29598550 ~ 29604909 (+)
G2220223 NA non-coding upstream 157 28952083 ~ 28952436 (+)
G2220031 NA non-coding upstream 338467 28613919 ~ 28614126 (+)
G2220026 NA non-coding upstream 345994 28606269 ~ 28606599 (+)
G2220025 NA non-coding upstream 349749 28602635 ~ 28602844 (+)
G2219990 NA non-coding upstream 403676 28548400 ~ 28548917 (+)
G2220225 NA non-coding downstream 274 28954224 ~ 28954455 (+)
G2220229 NA non-coding downstream 3185 28957135 ~ 28957485 (+)
G2220235 aasdh non-coding downstream 26542 28980492 ~ 28980755 (+)
G2220242 NA non-coding downstream 49670 29003620 ~ 29003835 (+)
G2220664 LOC101268910 non-coding downstream 73601 29027551 ~ 29029017 (+)
G2219991 NA other upstream 403115 28549029 ~ 28549478 (+)
G2219989 LOC105940532 other upstream 404509 28547538 ~ 28548084 (+)
fip1l1a fip1l1 other upstream 645267 28260830 ~ 28307538 (+)
LOC110521656 LOC106584103 other upstream 1108895 27823914 ~ 27844041 (+)
LOC110521646 LOC106584219 other upstream 1449913 27497328 ~ 27519290 (+)
G2220253 NA other downstream 67636 29021586 ~ 29021882 (+)
LOC110521703 LOC106584150 other downstream 1909874 30863624 ~ 30866524 (+)
G2225948 NA other downstream 4618190 33572140 ~ 33604894 (+)
LOC110521757 NA other downstream 6228019 35181902 ~ 35190209 (+)
G2228777 NA other downstream 6564284 35518234 ~ 35519242 (+)

Expression


Co-expression Network