G2221279


Basic Information

Item Value
gene id G2221279
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 29634853 ~ 29639083 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2540574
AGGCCAGGCCCTGTTTTTGACCTTGTATCCCAGTGATAATCCCTTGCATTATGCCTTGGAAAAAAACACTTCAatttgccattggctcaaccattggctcaatGTACCCCATGACTACTGGCTCAACTTAACCCAAGGCAAATATTTTGTCTATAGCCCaaacagctacaaggatgcactttcatgctaggtttaggacctcatattcaAGCTTATAAAGACCCCCAACTGATTTATAGAACAATCCtaaaatgatctactttggtttagatacaagaaTCATGATACCTCTAACACAGTAAATTAATATGACTTGGTGAAAATCCGTTTTTTGGACcaaacttgcttaccacttttcccatgtggtttcttccttcacaaaCTCCATAAAATGATGAACTCTTTTTAAATATATGgtcaacatttttacattttcattTTATTAATTTAGCACACACTCTTATCCAGTGTGACTTACAGTTTGTGCATTCATAGCTACtgtaggtgggacaaccacatatcacagtcacagTAAGTCAATGTTTTAAATAAAGTAGCTGTAAGTGAAGTCAGAGCTAGTAAAggggggaaaaagtcaagtgcgAGTGTTAGTTCACAAAATTGTTATTTATGGGAGGACtttatggtttcctagaaacaaggatggctcaacttacccctttggctcaacttaccccactctcccttaTGTATCTGTGTAATATTGATCCCTTATGTTGAGAGATTTCTTTAGTAAACGATAAACTTGTGATCACAAAAAGAGTAAAAAACACATGGGTATTGCATAATAAAACAGATAGTCAGATGTTTTCTCTTTTATGAGAGTTAAAATACATGGTTCTCTCCTGGATACTCTTCAATCGGTCCTCTCTTGGCCACAACTCCCATTCAGTCCAGTGGGGTAGTCAACTTAATCAACACAAATACTACTAAATACTGGTAGATATTTACAGAGAAAAATAACTACATCTTCAGGAATTTAATGTGTTGATGTCTTTTATGTGGTTGACCACAAATAATACATGTGTCAGATATTAGCTCCATAAGTCATCGGTCCATAAGTGTTTTCACTGAAGGCACAACATCTCGAGCAATAGCAGTAGATTGGCCAATCTATGCAACCAGATACACTTATCAATGCCACATCagaaacatgttgtgttgtgttagtatTGGGAAATTCCACAGTAAGAGAATACAACGATGCAACTATCGTTGTATTAGGACGATtgtttaacaatttccactgaaaacATTTCAAAAACACTGAAACGTTTCAAAAACACATTTGCTTGAAGAACACTGCAGATGCAACGTTTAGTAAAAGAAGGATGGCACAAACAGGACAAACCgttattctgttaccaaactttgcatctgctgttcttcaagtaaatgagTCAGTGGAAATGGTTCAAAGTAGTCCTTGaacatagagttgtatggttgaACTTTGCAGTCattgtttttgtttggcatacgtTTTAAAGTGAAAagtctcagcatcattctgtcaaagtggaattgcCTTATCGTTAATAAACTCTATTAGTGTACCGTGCCAAGTGATTGCAAAGTATGTGATCGAACATTTTAGCTTCAAGTGACATTTTCTATTGGACAATCAATGCATTACAATGACCATATTGTCAACTCCTGACCTGCAGTGTTGCAGTAAGTTGAATTGTGTGTATTGGGCAACAATATGGACTTGTATAGGTACTGAGTTGCTGTGTAATAATACTCCAATGTTGTGGCTATGACAGCTGCACCcttaaaatatataaaaacatgcAAGTGCAGAATAGAAACACAATGTAAGGTATTTATATCATTGCTACACTAGACTGAGATAGCGTACTACAAGAGCCTTTTCATACCGATACACCTCTACTTTTCAGACCATGAAAGGTGTGAAGACTAGTTATGATAGTGAATGGTGAGTGATAAACAGAAATGCTCAAAGCTGTATAGAAATACTTGATAAGATTAGTTCATTCATAATGGAgtgcatatatttatattttgttaTGCTAGAAAAGTCACAAAACTTTATGATGTTGATGTATTGGGTATGTGTCCTTTACTCATCTCCTATGCTTCATTGCTATCTTTAGGTGAAATTACTGATTTTCAATTAGTTCAccccccccaccaaaaaaaaaaaatatttggagAAAATACTGAGTTCTATTCTTTTATGAGATCCACTCTTACTCGGTATTCCCATCTTATCAACGTACAATACAGTGGTCCGTAAGCCACTCAACAAACTGCCTACCACTTGTCCCAAGGATTGCATGAGAGCATGGTTGGGGACACATTCTCACAGCTTCTCAAGGCACCTGGTTTCTACTGTATGTCTTTTCTTCTTAGACTGTTTACTACTTGGCTGTGGGAACACTAGAGTGTCCGGTTCCAAGAAGTCCCTCACCCTTTCTCCCCCATTTAGAACACTGGATGGGTACTGGATGTGTCACTAAGAGTCTCAAGGCAGAGGTCATATTCTCCTCCCCAGAAACTCTGAAAGCCAATGGTATTTTATTCCAGAGAAAGTTGTTGTACAGAtatggtctgtctatctgtctgtctatgatCTTTTTATTTAGACTATTTATTTACACTTTTTATTTAGACTATGGGACAAAATCATTAAAGATTACTTTGTCTGCAATAATTATGACCATTGGTTTATCTTTCTAAGAAATGGTGatgttcaaatgtatttgtttaaatCACTGTTTAATTGATTGGTGGTTTGTTTGTCTCTCAGTTGGAGTAAACATTTTACAAATAATGTCATATTGTCATATTGTGTTTCCACACTCTTTACTTTTTTAATTGACTTGTAAAATGTTGATTGGTTACAGCTATATAAGACAAATATAGTAGTAATTAGTCATTTGAAATATGGAGTCAATGTGGTTTAGAATGAGGtctatatatctttatgtttgtcCTTAGTTATCAAACCTGCAGTCTTGCTTAAGTCAGTTCCATCAAATAATTTTAAAGGCCTAATTCCACTTCAAATGATAACCAATTGGTTTGGAATTTACCCTTACTTTGCAATCATCTTCTTAATTAACCAGCTCCTGGTACTTCTCGGATCTCAGGAAGCGGCCGAAGGAGTCCTTCTCCATCAGAGCATAAATTCTCTTCTGGGCCAGGTCAAAGGTTGTGGAGGAAAGGTCAACCAGATTCCTCAGGGTCACATCCTTGGTGTAATGATCAATGTTCACCTTAAGGGAGGAAAAGTGAGAAgtatgggagggaggagagagtcagacagtcagagacagagagagagacagagagagacggagacaggaaGGATAAGgtgtggcatatcaagaagctgattaaaccacATGATCATACATatgtgtaccttgtgctggggacaattaaaggaCACTTTAAGATGtg

Function

NR:

description
regulator of G-protein signaling 5-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2540574 True 3450 lncRNA 0.37 2 29634853 29639083

Neighbor

gene id symbol gene type direction distance location
LOC110521693 LOC106584143 coding upstream 29944 29598550 ~ 29604909 (+)
LOC110521691 LOC106584140 coding upstream 330913 29284901 ~ 29303940 (+)
LOC100135939 LOC106584136 coding upstream 481149 29130397 ~ 29153704 (+)
paics LOC106584129 coding upstream 633361 28992608 ~ 29001492 (+)
si:dkeyp-117h8.4 LOC106584130 coding upstream 646278 28983183 ~ 28988575 (+)
LOC110521700 NA coding downstream 897153 30536236 ~ 30548668 (+)
LOC110521701 LOC106584149 coding downstream 1207598 30846681 ~ 30850528 (+)
si:ch211-117l17.6 NA coding downstream 1219755 30858838 ~ 30860485 (+)
LOC110521703 LOC106584150 coding downstream 1224541 30863624 ~ 30866524 (+)
rgs2 LOC106584094 coding downstream 1239603 30878686 ~ 30880955 (+)
G2221272 NA non-coding upstream 4609 29630024 ~ 29630244 (+)
G2220960 NA non-coding upstream 49780 29584869 ~ 29585073 (+)
G2220957 NA non-coding upstream 58735 29575885 ~ 29576118 (+)
G2220937 NA non-coding upstream 94568 29538068 ~ 29540285 (+)
G2220856 LOC106584141 non-coding upstream 107721 29413156 ~ 29527132 (+)
G2221307 NA non-coding downstream 33234 29672317 ~ 29691242 (+)
G2221345 NA non-coding downstream 97340 29736423 ~ 29736626 (+)
G2221420 NA non-coding downstream 103023 29742106 ~ 29742737 (+)
G2221437 NA non-coding downstream 117361 29756444 ~ 29756803 (+)
G2221474 NA non-coding downstream 140288 29779371 ~ 29779599 (+)
G2220253 NA other upstream 612971 29021586 ~ 29021882 (+)
G2219991 NA other upstream 1085375 28549029 ~ 28549478 (+)
G2219989 LOC105940532 other upstream 1086769 28547538 ~ 28548084 (+)
fip1l1a fip1l1 other upstream 1327527 28260830 ~ 28307538 (+)
LOC110521656 LOC106584103 other upstream 1791155 27823914 ~ 27844041 (+)
G2225948 NA other downstream 3933057 33572140 ~ 33604894 (+)
LOC110521757 NA other downstream 5542886 35181902 ~ 35190209 (+)
G2228777 NA other downstream 5879151 35518234 ~ 35519242 (+)
LOC110521768 sirt5 other downstream 6054227 35693310 ~ 35735400 (+)

Expression


Co-expression Network