G2222883 (LOC106584153)


Basic Information

Item Value
gene id G2222883
gene name LOC106584153
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 30886628 ~ 30900111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2542253
TTCGAACATCTAAACATTTTATTATGAAAATAAGACAAGCCCATTTAAACATATCTTTCCAGGCATGCATTACAGCTGAAGGGTAGACCTGGGTGGGACAGTGAACACTTGTATCGTTGGAGCTTCTGATTCTCCTCATCGATCAGCAGCTGATACTTTGCGATTTCTGATTGGAGGGAGCTGAGGAGAGTGCTGCTCTGGTCTGTGTCCATTGGCTCTTCCTCTGTTAGCTGGATCTGCAGTTCGGCTATCTTCCTCTCGTAAATCATCTTCCTGTCGGACACAATGGCCATCAGGTTGAAGCGGATCTCTCCCTCACTGTACttcTGTATTCTTTTCTCAATTACTGGCCGAACTGCGTTGATCCAATCGTCCTGGTTGCACACACCGAGGTCGATGGGTCCTTCACGTAGGCCGTCCAGCTCATAGAGCCTGCCGTTGACAGGGACGTAGCTCACAAAGTGGAACGCATCCTCATCCTTTGCAGAAGACTTGGCGTCAAACTCAAACATCTGCTGTCTGGCAAAGCTGTTGTGAACTTGTCGAATAACTTCAGAGTTGCTGAGAGCCAGACCTTTCATAGCTGCATCAAAGCTGAGTGAAAACTCTCTGAACTCTGTGAGTGTCTCTCCCAACAGCATGTCAGAGTGGGTACAGTTCAGCAGCACGCTCACAATGGCCTGGGTAGCACATGCATTGTTTATCACCTGCTTGGCAAAGAAGATGTTGTCAAGCCTTGAATCCTGAACGATAGATCCTCCTggctcctcacctggttgccacTTGAACAGGAAGATCAACC
>TU2542252
CCAATAATCAGTATCAACTTACAGCTGCATCAAAGCTGAGTGAAAACTCTCTGAACTCTGTGAGTGTCTCTCCCAACAGCATGTCAGAGTGGGTACAGTTCAGCAGCACGCTCACAATGGCCTGGGTAGCACATGCATTGTTTATCACCTGCTTGGCAAAGAAGATGTTGTCAAGCCTTGAATCCTGAACGATAGATCCTCCTggctcctcacctggttgccacTTGAACAGGAAGATCAACC

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2542253 False 802 lncRNA 0.48 8 30886628 30900111
TU2542252 True 243 lncRNA 0.48 2 30899270 30900111

Neighbor

gene id symbol gene type direction distance location
rgs2 LOC106584094 coding upstream 5673 30878686 ~ 30880955 (+)
LOC110521703 LOC106584150 coding upstream 20104 30863624 ~ 30866524 (+)
si:ch211-117l17.6 NA coding upstream 26143 30858838 ~ 30860485 (+)
LOC110521701 LOC106584149 coding upstream 36100 30846681 ~ 30850528 (+)
LOC110521700 NA coding upstream 337960 30536236 ~ 30548668 (+)
LOC110521706 NA coding downstream 21782 30921893 ~ 30926393 (+)
LOC110521707 LOC106584154 coding downstream 35344 30935455 ~ 30967780 (+)
LOC110521708 LOC106584155 coding downstream 78794 30978905 ~ 30989561 (+)
LOC118945898 NA coding downstream 268795 31168906 ~ 31168960 (+)
LOC110521713 LOC106584160 coding downstream 743723 31643834 ~ 31657204 (+)
G2222914 NA non-coding upstream 13576 30872600 ~ 30873052 (+)
G2222860 NA non-coding upstream 84168 30802158 ~ 30802460 (+)
G2222780 NA non-coding upstream 128357 30758014 ~ 30758271 (+)
G2222733 NA non-coding upstream 159646 30726609 ~ 30726982 (+)
G2222732 NA non-coding upstream 160187 30725961 ~ 30726441 (+)
G2222919 NA non-coding downstream 3739 30903850 ~ 30904125 (+)
G2222933 NA non-coding downstream 24416 30924527 ~ 30924773 (+)
G2222939 NA non-coding downstream 33469 30933580 ~ 30933949 (+)
G2222950 NA non-coding downstream 45252 30945363 ~ 30945954 (+)
G2222931 NA non-coding downstream 67958 30968069 ~ 30969884 (+)
G2220253 NA other upstream 1864746 29021586 ~ 29021882 (+)
G2219991 NA other upstream 2337150 28549029 ~ 28549478 (+)
G2219989 LOC105940532 other upstream 2338544 28547538 ~ 28548084 (+)
fip1l1a fip1l1 other upstream 2579302 28260830 ~ 28307538 (+)
G2225948 NA other downstream 2672029 33572140 ~ 33604894 (+)
LOC110521757 NA other downstream 4281858 35181902 ~ 35190209 (+)
G2228777 NA other downstream 4618123 35518234 ~ 35519242 (+)
LOC110521768 sirt5 other downstream 4793199 35693310 ~ 35735400 (+)
LOC110521770 igfbp-1a2 other downstream 4900921 35800643 ~ 35805071 (+)

Expression


Co-expression Network