G2227557


Basic Information

Item Value
gene id G2227557
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 34510246 ~ 34511985 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2547247
GGAAGGGGAGGGGCTGTAGTGACTCTGTAACTGAGCCTTGATTGACCATGCTCCTTCCTGTTGCATGAGTAGCTATTTTCAGTAGTCTGAttcggcaaaaaaaaaaaaaaaaacggaggTATGCAATCAGTCAACCTTTAGGTCCTTATTGAAACTGTCAGTGCATTCATTGTAACCCTCGGTATATGACGCTTagctcacaggaggttggtggcaccttcattggggaggacgggattgtggtaatggctggagcagaatcagtagaatggtgtcaaatacatcaaacacatggtttccatgcgtttgataccattccattggtTCCGTTCCAGCAattattatgagccttcctctcctcagcagcctcctgtggtttaGAAACGTAATGTACTCCCAGGGTCTCTACATGGTTTTGCTGTATTTGGCTCTGTGTGTTTGACTGCGTATAGACCAGTCCCTCACTCACCTCTGGATATCACCTGTCACAGGTCTAGTTGCTGGGGTGTAAATCCTCGTCAAGCCAGAGAGAGGTTGATCCAACCTGATGACTGTGGTCCTCGTCTGGACTGTGACACCAGTGGCACCAGCAGGCATTATGTCATCAGCCTGTGCCTTAGCTCTGCACAAAGGGCAGTGGGGTAACCACTTTAAAGAGCGCGAGAGACATAGTCGGCAGAACCTgcaacacacgcacgcacacacacacagcacacacacttcATTCAATTAAATGTGTAAGCAACATGCATAACTGTGGTAATGGTCCACTGATAAAGTGGGCACATTCTTCAGTCATGAAGTATACACTTACAGAATCAAACCTCTAAGAACCTATTTCCCAACACTGCAGCTATGTCATAAATCCAGACAAAATCGATCATAACATTGAAAGAAAAAGGTTAAAGTACTCTCATCCACATTTAGATAGGCTACCTTCTCTCAGAAGAGGAATTACCTTAAATATAAGTATAATATTTGGGAATATCAGGGGATTTTTTTTGTGGTGTGAGGGAAAATTCCCCTCATGTAAAGACACGCTATCAAGTGTTATTGTTATTTACCAGCAGTGGACGGGGTGCAGGAAGTAAAGAACCTTTTTTATTACTTAGAGTCATTGGTAAAATCATATCATATGATCTTTGACAAGACATCCATAAACTAAACTGTAGTCCACTTCACAAACAACTTATTTGAGGGAGTTCAGACACTGAGTCAATTATATTAGAGAGAATTACCTATTTGGGATTAGAGACCGTTATAGCCATCAGCTCCGGGAAGTGAACCTaatttacattcactcaatttaAATAGAAAGACCAGGCTACACGTTAAGTTACAGATTAGGCTGGAAGCTgtggagtaacactagataataTGCCAATAAAAAGAGGTTACTCACACATGAGAGCAGGCAGCAGGGTGATGTGGGTCCATCAGGGGGCTCATACAGATGGGACACTCATCCTCAGATGGGGTCTGCAGGCCTGCTGCAGAGTGGGCCATACTTTGGCTGGGACAGATTCTCTTTCCAGGACAGAGTACACTACAGTCTCCCCTGGGGccggtgtggtgtgtgtgaggcaGCGAC

Function

NR:

description
E3 ubiquitin-protein ligase RNF138-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2547247 True 1591 lncRNA 0.44 2 34510246 34511985

Neighbor

gene id symbol gene type direction distance location
LOC110521746 LOC106584195 coding downstream 26671 34398316 ~ 34483575 (-)
LOC110521745 LOC106584194 coding downstream 130512 34329362 ~ 34379734 (-)
LOC110521744 LOC106584192 coding downstream 590443 33835382 ~ 33919803 (-)
LOC110521743 LOC106584191 coding downstream 781858 33721919 ~ 33728388 (-)
LOC110521741 LOC106584188 coding downstream 799356 33686041 ~ 33710890 (-)
LOC110521753 LOC106584200 coding upstream 230949 34742934 ~ 34758146 (-)
LOC110521756 LOC106584201 coding upstream 654902 35166887 ~ 35169270 (-)
LOC110521758 LOC106584076 coding upstream 685825 35197810 ~ 35205192 (-)
LOC110521759 LOC106584097 coding upstream 704723 35216708 ~ 35219689 (-)
irf4l irf4 coding upstream 981969 35493954 ~ 35500738 (-)
G2227412 NA non-coding downstream 116125 34392975 ~ 34394121 (-)
G2227511 NA non-coding downstream 117746 34392288 ~ 34392500 (-)
G2227124 NA non-coding downstream 360021 34149931 ~ 34150225 (-)
G2227118 NA non-coding downstream 366112 34143921 ~ 34144134 (-)
G2227113 NA non-coding downstream 369077 34140658 ~ 34141169 (-)
G2227794 NA non-coding upstream 16514 34528499 ~ 34635183 (-)
G2227867 NA non-coding upstream 169447 34681432 ~ 34685403 (-)
G2227898 NA non-coding upstream 193279 34705264 ~ 34707367 (-)
G2227914 NA non-coding upstream 196156 34708141 ~ 34708365 (-)
G2227915 NA non-coding upstream 196713 34708698 ~ 34708933 (-)
G2227478 NA other downstream 186591 34311142 ~ 34323655 (-)
G2226745 NA other downstream 700352 33809379 ~ 33809894 (-)
G2226519 NA other downstream 880352 33629122 ~ 33629894 (-)
G2224948 NA other downstream 2088199 32421732 ~ 32422047 (-)
G2227801 NA other upstream 30232 34542217 ~ 34542619 (-)
G2229175 NA other upstream 1286819 35798804 ~ 35799357 (-)
G2229647 NA other upstream 1701161 36213146 ~ 36214385 (-)
LOC110521777 LOC106584061 other upstream 2008367 36520352 ~ 36541228 (-)
LOC110521791 LOC106584041 other upstream 2989225 37498832 ~ 37523064 (-)

Expression


Co-expression Network