G2227867


Basic Information

Item Value
gene id G2227867
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 34681432 ~ 34685403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2547567
ATGTCGATTTTTGTTTGAGTGACAGACAGTGGACAttaaaagagaaaagaaaaggtTGAGGAGCAGGGAGTAGGGGAAGttagaggaggaaaaggaggaggtgaggagcacAGAGTACATAGCAGCTGATTCCCACCTTACTTGTGATCAATATCAGTCATTTTAATTAcattaataatgataataacagTATGGACACGAACTGTAAGAAGAACATATGTAGCAACAAATCAAAAACGAGAACCAACCAGTAATCATTGAAAACAAAGAGATTAAAAATCATCTCTTAAAGtggaaacatttatttttaacactTCATGTTTGTAAATCCTTTCTGTAAGTATTTCATGTTTCTTTTTTTCATGTATTTTTCTTTTATTTACTTTGTTTTTAAAAGTGGTGACCCGAAGTTCTGCATGCTGATTGGTCAATTTTCTACTGCCGTCccttacacaaacacatacacacacacacatttttgttcCGTCTTTCTGTCTCTGAGAGTAGTATTTTTGCAGTGCCCCTTGGTAGTCTATGTTGTTAACGTGAGTGTATGCCCTCCTTTCcactgtagaaaatagttttaaacatGTCAGTAAAAAATGTAGTATTGGACAAAGTATTGAGTGATCAGTTCTACTACTTACAGATTGTAATTCAGCCATTGTTGAGAGGTAAATGAAGAGtacatccaattggcgacagatgtTCATGTGAATATTCAAAAATATGCATTTTCCTACccgagatgtgtttccatcaaactgacCTGTTGCGGAAAAAAGTCTGTGCCTTaagacgtagtgcacataaaaataacttttgcgGTTAAATGACAATGTACCGAATAAATAATACAAGTTAAATGTggttatgtaaaaaaataaatggcgTTATATTGCGactgtgcccactctggtcttggtacGTGCTCTCTggccaacagctggcagatacagtgcACGTAGGATAGCCTATATGATGACATTATAATGGACAAAAGAGCGAGATTATTTTAACATGTCAAAAGGCAGCCAAGTATCGATCATCATTTCTCTGGattaagaccctcaatatttattggaaaggagcatcaatcACTGCAGTATTATAGTGGGAAGACGACCAaacatatcatcacgtgactcgAAGTTtgcttcgatatgatggttatttgCGGTTTCCATCAGGACTGTCGTGAAATGTTTTATCTATACTTCACTCACTTAAAAAGGTTGGATAGAAACCTGGTTATTGCTCTGTCGGTCTCTCCTGTTCAATGAGCTCTCTGATGCAGGGCGAGTCACAACGAGCAGCTAGCTTTTGGACTAGATCATGTCTCTGTCATAATCATCAGAACTATTTGCTCATTCAAATGTGGTCAAACAACATGTATCCTGTATCAAAGGACATGTATCCTGTTCCAAAGGACATGTATCCTGTTCCTGTGTCAGATGATGCCAAGCTTTGTTTGATTAGAAATGGTCCAGGTCCCACCCTGATAGAATGCACCCAGTCCTTGTGCAACCGAGGTGTTGTAATGCTATACATCATTGATTTAAAGGACACTAcctaccaaatggcaccctatataatgcactacttttgacgagggAAATAGGGTATCTTTTGGGATGCACATACTAattcaagaaaaacccttgaatgagtaggtttgtccagacttttgactggtactgtacatttttcaatgacgggttaactgccttgtgggttaactgccttgtgggcagaacgacagatttgtaccttgtcgggatttgaacttgcaacctttcggttactagtccaacgctctagccactaggctaccctgccaccccacatAGTGACATACACCCCATTCTCCCCTCCCGTTCTTCCTCACTCATCCACTTTATCTCTTCAACATGTTGCTTGACTGCTATTTAACGCAGAAAAGATCCATCCACAGATACGCAACATCTGAGTGCGTGAGGGCTTCCGTGAATGTTAGAGTACGAGAGTCCTTCTGCGAGAATGTGGACTTAATTAGGTTAAGGgtggtgtgtgcgcgtgtgtaaaCACAGACTGAacagaacaaaaaaaaaacagcaggaCTTAactctcagacacacagagagacacaccaaCTGTACCCTTCAGAGAGCACATACATGCCTACATGTCCACACTCATTCTCTCAAACATAAAGACGATGTgcatcccaaagggcaccctattccctatatagtgcactacttttgacaaaaaaactagtgcactataaagggaatagggtgcaatgtgggacacacagacagacaacgtGAATCCTAAAGTATATTGTCTAATAAGAAGGCATTAGGAAATATTgctgaaataaatacaaataaattaaatgaTATAAAATCGTGGGCAAAAAACTTAACTCTGTTAAATACAACAAATCaattaataaaataataacataTATTTTTAATCCATACCCAGTCAAATCAGCAACTAAAGAAAAGTTTACAGGTCCAAAAGACAGGTCCAGTTTTTCTGaccgagagaaacagacagacagacagacagacagacagaggtggacGGATCTCAATTGAGACATTGGGAAATCATATCAGTATGAGAGTATAGAGGTGTGCACCATCTTGAGGATGTGTTGTGGGGGTAGATGGTGAGGGGCTCTAGGGGTAGAGGTTGTGTGGTTGTCTGGGTGGTCAGAGGGGTGAGTGGGGCAGGAGGGCCTATGTACCAGGTGGATGGGCGATAAGGGCTGTAGGGTTGTCTATCACTTCTGGTTGCAACAGTCACGGTTGATTGGCAGTGCTGCGATGATCCCGTCTAGCACCTGACCTGGATTCACCCCCCCCACCGTCCCGAAAAATCTAAATAAAGAACTTTATTGACATCAGTTGGTTGGTGACAACAGTGCAGATGGACTGACAGGCTTCATGGcagcagagacaggagaggaagcGAGACATCTCACGCCCTCCTTTTTTTCTGGTTCATTTAGTCAATGAACTAAACAGACCAGACTCAGCTGCTAATGCATTGGTACCTATGAAAGAGTCATCCCTTAAGCAGACCGGAACTGTGACCATTTTTATCAATGGTAAACAGCCTGAGTGGGACATCTGATGGCAGTTTGACTGCAGCTCTGGGTTCGGAGCTGATTTGTGGTCCGACACCCTGATTTCAGAAattgtgtgtatggatgtgtactatacaagtgagtgtgtgtacacGTCAGTAAATGTACATGTGACAGTATGTCTATGTGAGTATGTGTAACCctgtacatcagtgtgtgtgagacGCAAGTCCCTGTGTgtagggtgggggtagaggttagaggtcaggggtccgGGTCAGGCTGGGTTGGGGCTCCTTCGGGGATCATCCCGTCCTGTGTGAATGGATGGTTTTGGGGTCAGTAGTTGTAGTTTGGGGGCTATAGCAGGGTATATGGGTAGGCAGTTGGAGTTGGGAGGTATCCCAACTGGTCATCCCAATTGATGTTGGGGGGCTAGAACAGGGTCTGTGGGGCAGGTGGAGCCTTGGTGGATTTATGGGCACATTTCAAATTGGGGGGCAACCCGTGTGGGTTTTTTTCAGGGTAGAGTAGTTGAAAAGTGGACGGCTATAGCAGGGAGAGAGGCGCTCCGTGTCGTATGGTCGTTTTGGGGCACAGTTGGGGGGCTATAGCAGGCCATCCATAAAGCTGGTGTCGAGGCGCTGGATGAGCACGCGGATGAAGGACATCTCTTTACGCGTGTTCTCAAAGATGATGCGTGGGTCGTCTGACTGGCAGCGCAGGCAGTTGGGAGCCATCACCATGGCCAGGTTGTTCACATCCATCTTAGTTATCACCACGTTGGTAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2547567 True 3873 lncRNA 0.43 4 34681432 34685403

Neighbor

gene id symbol gene type direction distance location
LOC110521746 LOC106584195 coding downstream 197857 34398316 ~ 34483575 (-)
LOC110521745 LOC106584194 coding downstream 301698 34329362 ~ 34379734 (-)
LOC110521744 LOC106584192 coding downstream 761629 33835382 ~ 33919803 (-)
LOC110521743 LOC106584191 coding downstream 953044 33721919 ~ 33728388 (-)
LOC110521741 LOC106584188 coding downstream 970542 33686041 ~ 33710890 (-)
LOC110521753 LOC106584200 coding upstream 57531 34742934 ~ 34758146 (-)
LOC110521756 LOC106584201 coding upstream 481484 35166887 ~ 35169270 (-)
LOC110521758 LOC106584076 coding upstream 512407 35197810 ~ 35205192 (-)
LOC110521759 LOC106584097 coding upstream 531305 35216708 ~ 35219689 (-)
irf4l irf4 coding upstream 808551 35493954 ~ 35500738 (-)
G2227794 NA non-coding downstream 46249 34528499 ~ 34635183 (-)
G2227557 NA non-coding downstream 169447 34510246 ~ 34511985 (-)
G2227412 NA non-coding downstream 287311 34392975 ~ 34394121 (-)
G2227511 NA non-coding downstream 288932 34392288 ~ 34392500 (-)
G2227124 NA non-coding downstream 531207 34149931 ~ 34150225 (-)
G2227898 NA non-coding upstream 19861 34705264 ~ 34707367 (-)
G2227914 NA non-coding upstream 22738 34708141 ~ 34708365 (-)
G2227915 NA non-coding upstream 23295 34708698 ~ 34708933 (-)
G2227897 LOC106584198 non-coding upstream 46248 34731651 ~ 34737472 (-)
G2227947 NA non-coding upstream 74828 34760231 ~ 34760522 (-)
G2227801 NA other downstream 138813 34542217 ~ 34542619 (-)
G2227478 NA other downstream 357777 34311142 ~ 34323655 (-)
G2226745 NA other downstream 871538 33809379 ~ 33809894 (-)
G2226519 NA other downstream 1051538 33629122 ~ 33629894 (-)
G2229175 NA other upstream 1113401 35798804 ~ 35799357 (-)
G2229647 NA other upstream 1527743 36213146 ~ 36214385 (-)
LOC110521777 LOC106584061 other upstream 1834949 36520352 ~ 36541228 (-)
LOC110521791 LOC106584041 other upstream 2815807 37498832 ~ 37523064 (-)
G2232820 NA other upstream 4080019 38765422 ~ 38767903 (-)

Expression


Co-expression Network