G2227897 (LOC106584198)


Basic Information

Item Value
gene id G2227897
gene name LOC106584198
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 34731651 ~ 34737472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2547605
GTATAGTGATTGGCAAAGTATTAGGAAAAGCGCGGGGTCTGTGACATACAGGCTTGACGTCCAATAGGATGGAGGACTTTGCGATGAGGGTGGGTTTCTTTGCTTTCTTCTCTGCGTACTCTTTCAGCCTCTGCTCTTTGAGTCGCTCAGCCTCCGCATCCTCCTCTTCATCGCTGCCGAACAagtccatatcatcatcatcatcttcatcctccACTGGGGGGCTGGTCTTCTGCTGCTGGACAGAGGTTCATTTGTACAGGGGGCTGCAGAGACTGGGGCTGCAGCTGGTGACGGTGATTTCTCCAGCACCGCTACCCGACACTCCAATTTAGACAGAGCCAACCGCAGGTCCTCCAccacttggTTCAGACTGCTGTTCTCTAGCTCCAGGCTCTTAATCCGTGTGATGAGTTCGCCTTGATCTCCTGCCCCATTAGCTGCActctgaacacacacacgaaAGAGTGTCAGGATATCCCTATAAGCATATCACCAGCGAACTCTAGTGGCTAAACTTAGGTACCACCACAACCAATTGAGGAGACAGGGCAGACATGAATAGAATGAGCAACACATTATATCACCTGTACACGTAAATAACCACCATCACCTAGAGGCACAGATTGGACAACAACAGCTACAATTGCAGCTCATGCAAAGCTGTCTCACTCAGGAATAAAAAGGTACTTTAGAGTCTGTGGTCATGGTGACGATCAGAGGAAAGTTTCAGGAAATCCAGGTAACCCCTCTGGAGCATTATACATGGAGGTGTCCAAATATTAGAATCCTGA
>TU2547601
GTGCACCAAAAGCTCTTTATTATTAACCATGAGTGACACAAACAGCAGCAAGGGACGGACTGGGAACATGGTTATGTCCCACATGACAcgctattctctatatagtgcactacctttgaacaGCTCATAGGGCTTAAAGTAGAGCACGACAGAGTGAATGGGGTGCCAGGTGGGACGGGCCCAATGAAAAGGAAGAAGGTCAGAATCAGATCTTGTTGAAAGCTGCTACCTCCTCTAGCAGGTCTGTCCCGACCTTGTCGTCCTCGACAACACACTGGATCTGTAGCTTCCGGATACCATAACCCACAGGAACCAGCTTAGATTGACCCCAAAGTAGACCGTCAGCGACAACAGACCTCACACATTCCTCCAGCTTAGCCATGTCTGTCTCATCatcatcatcatcttcatcctccACTGGGGGGCTGGTCTTCTGCTGCTGGACAGAGGTTCCCTGAAGAGAAGAGGTGATTAAAATACACACTCATATtgtaccagacaaaagt
>TU2547604
GTGCACCAAAAGCTCTTTATTATTAACCATGAGTGACACAAACAGCAGCAAGGGACGGACTGGGAACATGGTTATGTCCCACATGACAcgctattctctatatagtgcactacctttgaacaGCTCATAGGGCTTAAAGTAGAGCACGACAGAGTGAATGGGGTGCCAGGTGGGACGGGCCCAATGAAAAGGAAGAAGGTCAGAATCAGATCTTGTTGAAAGCTGCTACCTCCTCTAGCAGGTCTGTCCCGACCTTGTCGTCCTCGACAACACACTGGATCTGTAGCTTCCGGATACCATAACCCACAGGAACCAGCTTAGATTGACCCCAAAGTAGACCGTCAGCGACAACAGACCTCACACATTCCTCCAGCTTAGCCATGTCTGTCTCATCATCCCACtgtaagagaggggagggagggaggtggggtatagagagagggcaggggggagACGGATG

Function

NR:

description
Elongation factor 1-delta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2547605 False 794 lncRNA 0.49 3 34731651 34736743
TU2547601 False 506 lncRNA 0.48 3 34736439 34737472
TU2547604 True 460 lncRNA 0.51 2 34736812 34737472

Neighbor

gene id symbol gene type direction distance location
LOC110521746 LOC106584195 coding downstream 248076 34398316 ~ 34483575 (-)
LOC110521745 LOC106584194 coding downstream 351917 34329362 ~ 34379734 (-)
LOC110521744 LOC106584192 coding downstream 811848 33835382 ~ 33919803 (-)
LOC110521743 LOC106584191 coding downstream 1003263 33721919 ~ 33728388 (-)
LOC110521741 LOC106584188 coding downstream 1020761 33686041 ~ 33710890 (-)
LOC110521753 LOC106584200 coding upstream 5462 34742934 ~ 34758146 (-)
LOC110521756 LOC106584201 coding upstream 429415 35166887 ~ 35169270 (-)
LOC110521758 LOC106584076 coding upstream 460338 35197810 ~ 35205192 (-)
LOC110521759 LOC106584097 coding upstream 479236 35216708 ~ 35219689 (-)
irf4l irf4 coding upstream 756482 35493954 ~ 35500738 (-)
G2227915 NA non-coding downstream 22718 34708698 ~ 34708933 (-)
G2227914 NA non-coding downstream 23286 34708141 ~ 34708365 (-)
G2227898 NA non-coding downstream 24284 34705264 ~ 34707367 (-)
G2227867 NA non-coding downstream 46248 34681432 ~ 34685403 (-)
G2227794 NA non-coding downstream 96468 34528499 ~ 34635183 (-)
G2227947 NA non-coding upstream 22759 34760231 ~ 34760522 (-)
G2227952 NA non-coding upstream 27754 34765226 ~ 34765454 (-)
G2227955 NA non-coding upstream 31066 34768538 ~ 34768781 (-)
G2228207 NA non-coding upstream 261016 34998488 ~ 34998730 (-)
G2228255 NA non-coding upstream 296617 35034089 ~ 35036399 (-)
G2227801 NA other downstream 189032 34542217 ~ 34542619 (-)
G2227478 NA other downstream 407996 34311142 ~ 34323655 (-)
G2226745 NA other downstream 921757 33809379 ~ 33809894 (-)
G2226519 NA other downstream 1101757 33629122 ~ 33629894 (-)
G2229175 NA other upstream 1061332 35798804 ~ 35799357 (-)
G2229647 NA other upstream 1475674 36213146 ~ 36214385 (-)
LOC110521777 LOC106584061 other upstream 1782880 36520352 ~ 36541228 (-)
LOC110521791 LOC106584041 other upstream 2763738 37498832 ~ 37523064 (-)
G2232820 NA other upstream 4027950 38765422 ~ 38767903 (-)

Expression


Co-expression Network