G2228660


Basic Information

Item Value
gene id G2228660
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35473033 ~ 35476756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2548402
GAAAAATTAACCAACTCTGATGggcattcctacagtcagcatgccaattgcactctgtggcattgtgttgtgtgacaaacctgcacatgttagagtggccttttatattccacagacactggacagaggaacctAGAACgctagcatcccggagtcgcctcttcacttttGCTTTGCTCACACAAAGCCCCGGAAATAAATTGGTGGCACTGCACACAGTTTTCACGAGCCTTGTTTTGTGAGCACCTGCCACAGGTGTTGCATAATCTCTGGGAAGAGGTTGCGTGGGATGGTCTCTCTGAAAAAGTCCACACCATACCTATCAGACCAAAATAACTCCACATCCATGCTCTTACCGCCGTATGCCCCACAGACATACAAGAGTGCCATAAATGCTTTGAGTTCATCCATAGACATGTCCCACATACTGTTTATTTTTCTGTGCGCATGAGCAACAGTACAATCTTTGATGTGCTACAACATCTGCATGCCACATAAACTCGTCACTCTTTTCTACCCAAACCGTGccgtccctcccagactcctgtctcatgGTGGCAGTTGGGCTCACCGCCTCAGTTGGCTCTGTTCTGGTTTTTCCGCGGCGAGACTCAGGCATCGGAGACGGAGGCTCGAAGTCAACATCAGAATCAGATGAAGACTCTTCATCAGCAATGTCGATTTTCAAGCTCCATATTCGTTACTCCAATTCATCTAGTCTGTCAGTGCGTCCATTCGTTTGGTTCGGCTTGCCATTCTGAACTACACTCAGTGTCTGATTTGACTCTCCGATGGGAAATTATATACAATTTCCAGCCTTTCATAATACAATAATTAGACAGCCCACAATTCATCATCattacactattgttctaaattcaatcatCCTCTTAACCCTCATTATTCAGATAAATCTAGTTTAATCACCctcctcatcattcagttcattGAAGTCACATGCaccattatcagtttctatttggttTCTATCGCCCATTCATCCATTGATAACAGAATAGCATATTTAAATGTTATTAGGTTACTAGTATTTGCTTAGTAGCCACCGCAATGCTGCCACtcgagtggtcatgtgctgaatgcatgGACAGCACGGATATTCTTGGAAAAAGTGACATTGGTAAATAGAGATGCACCTCTTGAATTTGAGAGTTATTTGACAAAGGTACATGTCATAGAAGCTGCAGAACATGCTCTTTCTGATACTATATAGAAATTGATACTCCTTTCCCTCTATCTGTCAATTACAAGATGCGCCCATCTCATCATGTACAAACTGATAGGCCTAATATTGTCACTCGTCAGATTAATGTAAATGTTATCTTGTCTATAGGCTAACTCTTATTATGTGTGAAATTAATTTCGGTGTCGTTTCAATGGGCCGGCTGTGCAGGCATTGTTTGTTTCCCGCTCATCAACTTGGATAGAGTCAAGGAAATGTTTTGCAGTGGACTTCCGCTCGGGCGATGTACGAAGACGTTTTTGAGAGAGGTCCCTAATTAAAACTTAAATTTTTACGTTTTTAGACACCGCTGTTTTTCTGTTGCTGTATCGGTTGGTTATATTATTTGAATAATTTTTTATGGTACCATGAGCTAGACCAACCCGAAGAGAACTGCTACAACCAACACATCGTCGAAGGCCGAACCAACTACTCGAACACTGAAAATGGCTGCCACGGCCAGCCCTGATGCAGAGTCGGAGCCCTTGTCTATGACCACGCTTGTAGCTGAGCTAGCTAAACAAATAAGTAGCCTAAAAGAGGATATGGCTTCTGTCATCAGCCCTTCGCTGGCACCTCTCCAAACTTCCGTTGATGCCTTTTGGGAAATAGTCAACACTTTTGGGCACTCACTACACGAGAAGGTTTCTCCACTAACAACGCCAAGCATATTGCCGAGCTAGTAGAGGCAGCTGCCTCGCATATGGGTAGATTCGTTGGAGAATTAAACCAGAAGGGAAAGTATCTGGATCGTTGAGACTAGTCAACCCTGTGAAATTTGTCTCTGACATGCTGGTAGTAGTGATGGGAAATGGTGTCTCGCCCGAACACACAGATCTCTCGCCCCCAATCCCAGCTCAGGGGAGCAGCCTAGGGCAATCATAGCCCACTTTCATCATTACCAAGATTAGGAACGTGCAATGCGCTGGGCGAGGGAGCAAAATTCCGTGGCCAAGATATATGATTCTACCTGGACCTGTGTGCCAACCTCGTGAAGCTGAATTCAAGGAAATCAAAACCTGTCTCTACAAGAAGGGGTCAAGTTTCAGCTCCTCAACTTTTCATGTCTTTTACAAGGGAGAGGACCCTTATTTTTGACACACTTGCATTCAAAATGCAATGTTAAGTCAAGGGGAACAGCAATACTTACTCAAAGAAAGTACAATTTACCTCTCCTGACATAATCTCAGATCCACAGGGGCGTTTTGTTATGGTATCTGGTTCTCTCTTTCACACCTTTTTTGTTTTGCTTGTAaatgtttatgctcccaattgggatgatgtagatttttttttttaacaaacttATTTCTTTGCTGCCCAATCTCAACTCTCAcactatttcatttttggagGTGACTTGAATTGTGTGATCCAATTCAAGGCGTTCAAACCCTAGAGCATTTTCTCCCTCAAAAATGTCCAGCGCTTTGTCTACATTCATGAGACTGGCAGGATGTGTAGATCCATGGAGATTCCTTTTTTCCAATAACAAGGAATTGTCTTTATTTTTATGTAGATAAAGCCCGTCTCCCATCTGTAAAGAAAGTAGAATACTCTGCCGTTGTTGTTAGTGACCATGCTCCTCTGTCACTCGACCTCTCATTCTCATTGAACTATacatatcacccccccccccccccccccccccccatggagaCTCATCTCATCTTTACTTTCAAACAATTCCCTCTGCCCAATTCTATCGAATGCAATTGATGTCTTCATTGAGACAAATAAAACAGATTCGATCTCTGTCTACACTTTGGGAAACACTTAAAAGTGTTTATCCTCTCAGAACAAATGTCCTATTCCTCTCCTCAATAAACCACGGAAAATTAAACAACAGCAGCTGATCGACGCCATTCTGGAATTAGACCAACAATACTCCACATTTCCATCACCAGAACATCATAAAGAAAGGCTGAGTCTTCAAACTCAGTACAATTTACTATCCACTGATAAGGCTGAGGAGCAGCTACTTCACGCACGCAGGTTTTGTTTACCAGCATGGAGAAAGGGCTGGTCGACTTCTAGCTTCTCAACTCGAGTTCAAATCTGCCTCACAGCTGATCCCTCAAATTCCTCAGGTGTTTTATCAGTTAGTCCCACTGAAATCAATAATACTTTCAAAACCATTTTATTCAGACCTTTAAACATCAGAATCACCTGAAGACAATTCAATTATGAATGATTTTCTTGACCATTCGGAAACTCCTACCAGAGGagtacagagaagagaggggaaattGATCAACTTCTTTGCAGTTCGAGGAGATTTTTCATTCAATTACAGCAATGCAAAGTGGGAAATCCCCTGGCCCAGATGGCTACCCAATCAAATTCTACAGGTTTTCTGCCAACCTGGCGCTTCTCCTGCTGGAAATGTTAGAAAACACCCAGGACCATGGTGTTTTACCCCAAACCCTGACAGAGGC

Function

NR:

description
PREDICTED: activating transcription factor 7-interacting protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2548402 True 3678 lncRNA 0.43 2 35473033 35476756
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110521757 NA coding upstream 282824 35181902 ~ 35190209 (+)
LOC118945793 NA coding upstream 356275 34960599 ~ 35116758 (+)
LOC110521755 NA coding upstream 540396 34927630 ~ 34932637 (+)
LOC110521751 LOC106584199 coding upstream 636760 34776810 ~ 34836273 (+)
LOC110521754 NA coding upstream 726133 34743576 ~ 34746900 (+)
psmg4 psmg4 coding downstream 66751 35543507 ~ 35545435 (+)
wu:fi04e12 LOC106584072 coding downstream 105517 35582273 ~ 35618259 (+)
tbc1d7 tbc1d7 coding downstream 143163 35619919 ~ 35634039 (+)
LOC110521768 sirt5 coding downstream 247140 35693310 ~ 35735400 (+)
LOC110521770 igfbp-1a2 coding downstream 323887 35800643 ~ 35805071 (+)
G2228636 NA non-coding upstream 104561 35368122 ~ 35368472 (+)
G2228635 LOC107756720 non-coding upstream 105715 35366982 ~ 35367318 (+)
G2228630 NA non-coding upstream 111563 35361235 ~ 35361470 (+)
G2228618 NA non-coding upstream 121771 35350907 ~ 35351262 (+)
G2228552 NA non-coding upstream 132721 35340082 ~ 35340312 (+)
G2228782 NA non-coding downstream 48727 35525483 ~ 35525695 (+)
G2228785 NA non-coding downstream 54113 35530869 ~ 35531082 (+)
G2228825 LOC105030512 non-coding downstream 129102 35605858 ~ 35606235 (+)
G2228814 NA non-coding downstream 158201 35634957 ~ 35635306 (+)
G2225948 NA other upstream 1868139 33572140 ~ 33604894 (+)
LOC110521703 LOC106584150 other upstream 4606511 30863624 ~ 30866524 (+)
G2220253 NA other upstream 6451151 29021586 ~ 29021882 (+)
G2219991 NA other upstream 6923555 28549029 ~ 28549478 (+)
G2228777 NA other downstream 41478 35518234 ~ 35519242 (+)
insl5a rel3 other downstream 2108270 37584989 ~ 37587002 (+)
G2231371 NA other downstream 2846604 38315783 ~ 38336981 (+)

Expression

G2228660 Expression in all Baseline Samples

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G2228660 Expression in each Bioproject

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G2228660 Expression in each Sample
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Co-expression Network