G2229051 (LOC106584072)


Basic Information

Item Value
gene id G2229051
gene name LOC106584072
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35611012 ~ 35612791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2548822
AAGACCTGACTCTGGAGTTGCCCTATCTCCATCCTGAGTTTCTCCCTCTCCGAAGAGAGCTCTGCCACCAGGCTCTGGGTATCCAGGCTGCTTCCCGAGCTGCTCTTCAGCTGCAGCTCCAGGACAGTGATCTGGGCCACCAGCTCGTCATCAGCCCCCTGTCTGGTCCTCAGCAGCTCCTCCCTCTCATGTTTCACCCCCCTCAACTCCTCCTCGAGCCGCAGTCGCTCTTTGGTCAGGGTCTGGGTCAGGGTCTGGAGACGCTCGTGTTCTACCGAGCTCTCGTTGAGCACTCGGCTCTTCTCCTCGATGGTCTTGTAGAGTGTTTCGTTACGGAGATTAGCCTCGCGGACCTTGGCCTGCTCCTGGAGGAGATGCTGTTGGAGTGACTTCAGCTCGGAGCTCAGAGACGCCAGACTCTCCGTGGAGGCTTTGAACTCCTTCAACCTCCTCTCTAGCTCCTCCTGGAGTTTCCtgtgctcctcttctctcctcctccccacggTTTTGGCCTCCTCCTGACTGCGACGCAGGATGGTGATGGTGCTGGTGTACTCCCGCATGGTGTGGTTAGTTTTCTGGAGCTCTGTCTCCACGTGCCTCCTCTTGATCACCTCCTCCTGGCTGGTTCTCCTCAAAGCCTCCACCTCCCCATCTTTCCTTTCAAGAGTAGCCTGCAGCTCCTTGATGCATCCCTGTAACCTGGCtacactctgctctgccttgtTCTTCTCACCGCTCACCTTCTTAAACTCTGTACAGATACTAACcagctcctcctccacctccctcagcCGGGTCACACCCTGGGAGGAGGAGGTCTGCTTGCCCTGAATCTCCCCCAGGAGCAGCTCCATCctggtcctctcctcctccaatgctcccctcctcctctgctcctcgtCCAGGCTGTGTGTGAGGAGGACCAGCTGGCCGCTACTGTCCTGCAGGGCCTTGGTGAGCTCTGACACCTCATCTCTATACTGActactgtcctcccctctctgcctGACTAATATCTCCACCTGCGCCTCCAGCTCCCTTCTCCTCCGCGCCTCCTCTGTGACCACAGATCTCTGAGAATGGGCCTCCTCCTCCGCCATCTTCCGCTGCTCCTCGGCCTGACTCAGAGACACATTCAGCCTCTTGAGCTGGTCCTCCTGGTCCCTCCTATCAGCCTCTAGCCGGTCACACTGCAACTTGATGCCCTggtccacctcctccctctgGGAAGACAGGTGCTGGATGTCCGTCCTGCAGATGGTAATCTGGGACTCATAGCTGAGCTTTAGGTTACTGATCTCCACACTGCATTGTCTCCTTACCTTAGACAGCTCTTGCTCCAGCTCTTTGAAGCgctgcccctcctcctccagctgctTCCTTAAccgctctgcctccctctcctggGTCCCCACGCTCTTCTCCACCTCCATCTTTGCCCAGTTGGCCTGCTCCAACTCCTTCTGCCTCCTCCTCAGCACCTGCTCGTGCTCATCCTGCTGCTCCCCGTAGCGCTCATccgccatcctcctcttcctcttctcctcctcgaCGAGGGAGTTGAGGCGGGTCACCTGCTCCTGCAGCTCCTTCAGTTGGCCGCGGGTGGAGGCAAGAGAGTCCTGGGTGGCGCTGCACTGCAGGGCCGTGCTCCTCTTCACCTCCTCCACAGAGAGGAGCTGCTCCTGCGACTGGGACAGCTCCAGCCGGTAGCGGACTAACGCCTCCTCCAGAGAACTGTTCTTAGCGTTGTGGTCCTCAATGTCCTCTTTGAGCA

Function

NR:

description
desmoplakin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2548822 True 1780 lncRNA 0.59 1 35611012 35612791

Neighbor

gene id symbol gene type direction distance location
LOC110520993 LOC106584074 coding downstream 33965 35545576 ~ 35577047 (-)
LOC110521763 LOC106584075 coding downstream 96620 35499988 ~ 35514392 (-)
irf4l irf4 coding downstream 110274 35493954 ~ 35500738 (-)
LOC110521759 LOC106584097 coding downstream 391323 35216708 ~ 35219689 (-)
LOC110521758 LOC106584076 coding downstream 405820 35197810 ~ 35205192 (-)
phactr1 LOC106584070 coding upstream 29606 35642397 ~ 35717855 (-)
LOC110521771 igfbp-3a2 coding upstream 197777 35810568 ~ 35873392 (-)
LOC110521773 LOC106584067 coding upstream 287684 35900475 ~ 35966970 (-)
LOC118945798 NA coding upstream 306120 35918911 ~ 35920667 (-)
LOC110521774 LOC106584064 coding upstream 658321 36271112 ~ 36275588 (-)
G2229048 NA non-coding downstream 6504 35604252 ~ 35604508 (-)
G2229047 NA non-coding downstream 9355 35601396 ~ 35601657 (-)
G2229046 NA non-coding downstream 9747 35601053 ~ 35601265 (-)
G2229045 NA non-coding downstream 10425 35600199 ~ 35600587 (-)
G2229044 NA non-coding downstream 11219 35599495 ~ 35599793 (-)
G2229052 NA non-coding upstream 1150 35613941 ~ 35614177 (-)
G2229065 NA non-coding upstream 18646 35631437 ~ 35633769 (-)
G2229067 NA non-coding upstream 21369 35634160 ~ 35634543 (-)
G2229066 NA non-coding upstream 22163 35634954 ~ 35635332 (-)
G2229064 NA non-coding upstream 23803 35636594 ~ 35637613 (-)
G2227801 NA other downstream 1068393 34542217 ~ 34542619 (-)
G2227478 NA other downstream 1287357 34311142 ~ 34323655 (-)
G2226745 NA other downstream 1801118 33809379 ~ 33809894 (-)
LOC110521741 LOC106584188 other downstream 1908569 33686041 ~ 33710890 (-)
G2226519 NA other downstream 1981118 33629122 ~ 33629894 (-)
G2229175 NA other upstream 186013 35798804 ~ 35799357 (-)
G2229647 NA other upstream 600355 36213146 ~ 36214385 (-)
LOC110521777 LOC106584061 other upstream 907561 36520352 ~ 36541228 (-)
LOC110521791 LOC106584041 other upstream 1888419 37498832 ~ 37523064 (-)
G2232820 NA other upstream 3152631 38765422 ~ 38767903 (-)

Expression


Co-expression Network