G2229398


Basic Information

Item Value
gene id G2229398
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 36064230 ~ 36067189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2549191
ggggccgaatactttcgcaaggcactgtatatgtcacTGAAGGGGTTAAGAGCATCATGTAAATTGTCTTAAAATAGACTAATAGTTGTGGCCCAGTATTATTGTAGCTTACTTACTATACAGCTAAAGGTCTTTAGAGAGTTGAAAGAAGATAAACTGGACTTACTGTCAAACTACATCCTCTGGTCTTAAGACAATGTCATCATGTTGTTTTAATGTTGAAAACATGTTGTTTTACTTTGCTGTTTACTGTATCCCAGAGTCTTGCTTTTCCACTCCGGTCTTAATGAGCTTACTCTCAACAGTAAAAACAACAGTCACACCTACATCCACTCAGTACCTGAGCTTAGCTCTTACTTCCTCAAGCTAGAGCATTGTGAAtcttcttttttgttgttgtaagatTAAATTTTATTTGATGTTTAACAAAGAACACAAATGACATCACAcaaacatcaactacatcacacctCCCCAGACTTATTAGcacacacacccccatctccagtgcCCGCATAATTTTCCGCCACATGGCCTAAAACTGCATAATTTATTTTCTCTCCGTAGCCCACTCACTCTAAATTTTTTACAATAAATCATTcgatttttccattgtgttaatgatgcCGGATGAATTGATTTCCACATTTTTAATATACGTTTTTGCAAAGTGATTGATGAGAAAAGAATCGTCCagcccattgggtatctcacAACACCCCTATAttccatgtcttgaaatatgcataCTTAGAGATTAAGAGTAACAtcgtaatacttctgacagcccaCTTTCTAGCTCCGCCCACAAAAAAGactggattattgagtcattggatgcgtttgtaaattcactctggatatctactccgatttcagagctcTCTGGACTGAGTgcgccagagtgcagaataactgatgaatttacgaacacccATTTGAATATGAACGGTGTCAGTAAGCATTAGCAAAAAAAAAATTTAtttaattgttgccagcagcacagttacggTCACCAACGCTCTAGACAACATGAAAACACcctaaccagctctgccaggGTGAATAAAATGGTCAgaatgaggtgttctctcatttatgtaagctagccaactttagccagttagcttgagtgcttgacagccgttgtgaggtcagaacattCGGATGAACTttactcctcagccagagcgtccagtgtgcgctctgaacgctctgagagcgaaacactctgaatttgCCATTAACAATGGACAATCTGATATCCGGTCTGAATAttacgaacgcccagagcgcaCTTTGAGCTCACtctctggcactccagagtgaatttatgaaCACACCCATTATAGTTTTACACTTGGGACATGACTGCTGCTGTGCTGTATAATTGGTGAATTCTGTGTCTTGTACTGTATCATCAATTCCATAGATAAGTTTATACTGGGTTAAGCATACATTTTCGTTAACTGTAATTTCATTTTCATTATGCTCCaactttccctccatcttgtgccaacatcAGTTCTTTTTAggtcttggttccaatagtttttttttttttttttcttctgaTGTTTTGTAGTTTTTAATTTTGTACGACATTCTTATGCACCGGGACTTCATAGGAGGAGGAAAAACTAACGCTCTACGTATGTCATGACACCGAAATGGTTAACGTGGTAATATGCACATTAGGGGATTGACTAAAGACTTTTATATGTCTGGTACTTAGTAGAGTTGAATAGGAGAATGGACAGTCTACCATGTAGAAGCCAGCTATCAATGTAACCATAGAGGAGAGCTGACACAATTGttagacactttttttttttttttttatgttcacATTTTCAATATTTGGATGCAAACACTATTTTAAATTGTAATccatttgtcttttttttttttcaaaataatGATTGAGCTGTGTATTTCAGATTGTGAATTAAGTCTGCCATTGTGATCTGTAGTGTCTTGTTTGAGTGAGTGTAATTGTGTAAAGGGATTTGTATTTCTTTTGTTTATCATGTGGCTGCTCATATGATCAACCATCAATTCCTCTTTTGAGGTGTGCTTGTGCGCATGCACGTGAATCCTTTTCGTGTGTTATTTGTAGAGTATTTGCACAGAATTGTGTTGATGAATTAAAGGAGTGGATCAATGCATTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2549191 True 2172 lncRNA 0.38 4 36064230 36067189

Neighbor

gene id symbol gene type direction distance location
LOC110520994 LOC106584065 coding upstream 1530 36003309 ~ 36062700 (+)
LOC110521770 igfbp-1a2 coding upstream 259159 35800643 ~ 35805071 (+)
LOC110521768 sirt5 coding upstream 329270 35693310 ~ 35735400 (+)
tbc1d7 tbc1d7 coding upstream 430191 35619919 ~ 35634039 (+)
wu:fi04e12 LOC106584072 coding upstream 445971 35582273 ~ 35618259 (+)
LOC110520956 LOC106583994 coding downstream 371423 36438612 ~ 36489124 (+)
LOC110521776 LOC106584062 coding downstream 435962 36503151 ~ 36517233 (+)
LOC118945799 NA coding downstream 447613 36514802 ~ 36516539 (+)
LOC110521781 LOC106584055 coding downstream 608968 36676157 ~ 36685931 (+)
LOC110521782 LOC106584054 coding downstream 624227 36691416 ~ 36705489 (+)
G2229381 NA non-coding upstream 75253 35988738 ~ 35988977 (+)
G2229355 NA non-coding upstream 92975 35971036 ~ 35971255 (+)
G2229270 NA non-coding upstream 151456 35912548 ~ 35912774 (+)
G2229268 NA non-coding upstream 153607 35910105 ~ 35910623 (+)
G2229262 NA non-coding upstream 161451 35900498 ~ 35902779 (+)
G2229561 NA non-coding downstream 88497 36155686 ~ 36156108 (+)
G2229564 NA non-coding downstream 91453 36158642 ~ 36158907 (+)
G2229959 NA non-coding downstream 453158 36520347 ~ 36523684 (+)
G2230040 NA non-coding downstream 559826 36627015 ~ 36627235 (+)
G2230020 NA non-coding downstream 577401 36644590 ~ 36647937 (+)
G2228777 NA other upstream 544988 35518234 ~ 35519242 (+)
LOC110521757 NA other upstream 874079 35181902 ~ 35190209 (+)
G2225948 NA other upstream 2459336 33572140 ~ 33604894 (+)
insl5a rel3 other downstream 1517837 37584989 ~ 37587002 (+)
G2231371 NA other downstream 2256171 38315783 ~ 38336981 (+)
G2232661 LOC105030512 other downstream 2723126 38790315 ~ 38790675 (+)
G2232855 LOC100380853 other downstream 2745461 38812650 ~ 38813379 (+)
LOC110521001 LOC106584026 other downstream 3107457 39117484 ~ 39202411 (+)

Expression


Co-expression Network