G2230020


Basic Information

Item Value
gene id G2230020
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 36644590 ~ 36647937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2549865
AGTTTCTTGATACACAACCTGTTTGATAATACATGTACATTATAATACAGTTATGAATGCTCTTGTATTCATGTAGTCATATCCAGGTGTGTCAACCAGAAAATCTATCCCTACTTTTTACTGTTTAATAACTTCAACTTTCAGGTAAACCAGTAAAGTCATGGTCATCACAACTTGATAGGTAACCTGGTTTTCTGTTTTACTTGTTGGTCTGGTAACAGTTTTGGTTATAGTCATACTATTTATTCCTCTCTCATCACAGGTCTCTTCCATGCTAGAGCCATGTACAACAATGCCTGAGCTATGTGTCAAAGGCCTCATTCTTCACATACTgtatagcagtggtgtaaagtactcaagtaaagatactttaaagtactacttaagtcggtttttgaggtatctgtacttcactatttatatttttgacaacttttacttcactacattcctaaagaaaataatgtaatttttactccatacCATACCTGACACCCagaagtactcattacatttgaaatgcttagcaggacagaaaaatggtccaattcacacagttATCAAgatctgcctCTGATCATGGAACAAATACAGtacaatagctagctagctcttgCAAGCAAGTAGCACATATGGTATCATGTCATTGAGTTAAATGAGCAGACATTTACAGCAGATTTCATCACCAACATTGAAGCTAAATGTATGCAATAATACACAAAGCAACATTTGATTGACATAAATACAGACAATCCACAGCCTTTCGGACTATAATATATTTGAGCAAGGGAATTAATTTGTTACTGAACGTCTGCAAGATGGCTGCCTATGATAGATACTACTTGACTGACTTTTTGAAGGCCTTTAAAATTAAAATTAGGCCATTTCCTCCACACTTAAGTGAGGCATCGTATTACTAGTGTTTAGGGTTATATTCAtagtcttctctttctcttcaaAGGCAAAATCTCAAGTTCCTGTGCTGTGTGAATTAATAAGTTCACTTTCTCTAGTTCTACATCTCACAAATTAGATAGCTAACTCATGGAGTGAACACAGTACTTTAGAAACCATTTCTCATTTCAATGATCAATCAATTTGAAGCTAATAATAAAAGTATTGATGATGCACTGATGGACAACATTGTGACATGCCCATCATTGGCCCTagaaattagaagaaaaaaaaactacagTATACACTTTGCATACAGGTATCAAATATGTTGAGGTAGGAAACATCACAGCAGTCAGGACTTTTTAAAAATATCTATGTCTGAAAGCAAAACAATCTATTGTAACCGTAGACTACCCATTGCAATACAGTACAACCTTTAGTATAACACTATTAGCACAATTCAGTGAGTGAATGTTAACAAGACCATAACCTCACTTTTTATATCAGTCTGGGAATATTGCAGTATATTTTGATTGACTTGAACACATCACTGATAAATGAAACAATATATGGTGGGCAATTTGATGTGGAATTAAAGTATATGAATGGCCCGAGAGAGAGCCTACTCCTAAAGGAAAATGTTTTGGTGGTGCAAAATAGtagaaaaaaaacaaagcagtTGTACGTTGATGAAATACACTGTTAATTAGTTCTAAAAGAGCAATTATATAGAATGTTTGTTGAGTCAATTGTTACTAATGTGGACAATCACCATCTTTTTTAAAGTGCAAATTTACCTCAAATCCTGCAGCTTAAAACACCACTATCAAATGAACCCTTTCAATGATAGAATATTATGTAAAGAATATGTACTTCACTGATGTTCAGACAGAGGCATTCTAGTGATCTCATCATTCAAgagctttaaaataaaaaaatgttacaAGTAGGAACCCTGAAATAATTATATTGTCATGGGGGCATTACAAACTACAGCGTAACGGTTTCAGAGGGGCCATGTGACCAAGTACAGAACGCGGTTTATTTATTTGGTGGGGTTGTCAGCCACCATACACAAAACCGGTCGAGGTAAAGATTAATTTGTCTTTTTCAATCTCAGTTACGTTCTGAAATGTAGGTTGTTTGTTCCAAGATGCATGGTAACAAGCAAATACTGTGAAAACACTGAAAAATGATTGAAAAAGTACAACATCAGGAGGGTAAATAATACTACACTATGTACAAACTAAGAACACTGCTTTGATTTGTGAAGTCAAGTAGTtccgttttttttcttctttcagaTGGAGAAAACATTAAGTTGCTTTGACCCATTGAATTGGTGAGCAAAGGCAGATAATCTGTGTAGGGCCTGAACATTTCCCCTTTCACTCGCTCAAGAGTAGGCTTGTAACACTGAGGCAAAGGATAAAGGGGGATAACAGAGTAAAGGAATGTGAGAAGTGGTATCCTATACCATGTCAAACATGATTAGTGCTCTAAGGTACATACATGTACGTCAGTTAATCAAATAATTGCTAAATCAGAATCTACAGAGGTGAATTGCATTCAGTTTTGCATCTCGGTTCTTGGATAGTTTCCAAGATCATGTAGTGTGTGTCTTGGAGTTCCCTCTGTAACAAATAAAATCTGTCACACGTCCTTCCTTCCATTCCAAACCAACAGTACAGAAAGACAGACAACATGACCAATCAAAATGCACTGACCACTGAACACACAGCAAGGTCTCAAGCTCAACCCAACTTCCTCCTCATTTATTAACATCTGCAAGCTCAAAAAGGGGCCAGAatatcaaataaaaatacataaataaaataactgCTTCACCTTTGAACTGAAACAGTTCCTTCCTCCCTTACAAAACATTTCATCATCCAGTCAAAAAAAAAACTAATCAAATGAAGGCCTTGCATATTCTTGCtagagagtttttttttttaagttgttttttttttatatatattttttttaaatacagtgtaGCAGACAGGTGGTAGGTATGTACAGATGAGCCCTCTTCCATCGATCCCTAGCTCCCTGGTGTTCAGAGAGGGCCGGTGCGGTTAGTGGGGCCGACTGCTAGACTCTGACACCTGCCGTTTCCGGGGAGTTCCGTAACCGTTAAGGCTGCCGTTAAGGCGTTTGGTCAGACCACCGTTCAGAATGTCCTGGATGTGCTGAACTATAA

Function

NR:

description
PREDICTED: uridine-cytidine kinase 2-A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2549865 True 3106 lncRNA 0.36 3 36644590 36647937

Neighbor

gene id symbol gene type direction distance location
LOC110521776 LOC106584062 coding upstream 127357 36503151 ~ 36517233 (+)
LOC118945799 NA coding upstream 128051 36514802 ~ 36516539 (+)
LOC110520956 LOC106583994 coding upstream 155466 36438612 ~ 36489124 (+)
LOC110520994 LOC106584065 coding upstream 581890 36003309 ~ 36062700 (+)
LOC110521770 igfbp-1a2 coding upstream 839519 35800643 ~ 35805071 (+)
LOC110521781 LOC106584055 coding downstream 28220 36676157 ~ 36685931 (+)
LOC110521782 LOC106584054 coding downstream 43479 36691416 ~ 36705489 (+)
LOC118945913 NA coding downstream 53433 36701370 ~ 36701505 (+)
LOC118945805 LOC106584052 coding downstream 87988 36735925 ~ 36740556 (+)
LOC110520996 stxbp3 coding downstream 113005 36760942 ~ 36767311 (+)
G2230040 NA non-coding upstream 17355 36627015 ~ 36627235 (+)
G2229959 NA non-coding upstream 120906 36520347 ~ 36523684 (+)
G2229564 NA non-coding upstream 485683 36158642 ~ 36158907 (+)
G2229561 NA non-coding upstream 488482 36155686 ~ 36156108 (+)
G2229398 NA non-coding upstream 577401 36064230 ~ 36067189 (+)
G2230283 NA non-coding downstream 99487 36747424 ~ 36747831 (+)
G2230359 NA non-coding downstream 156091 36804028 ~ 36804227 (+)
G2230377 NA non-coding downstream 168199 36816136 ~ 36816547 (+)
G2230379 NA non-coding downstream 168679 36816616 ~ 36816816 (+)
LOC110521768 sirt5 other upstream 909190 35693310 ~ 35735400 (+)
G2228777 NA other upstream 1125348 35518234 ~ 35519242 (+)
LOC110521757 NA other upstream 1454439 35181902 ~ 35190209 (+)
G2225948 NA other upstream 3039696 33572140 ~ 33604894 (+)
insl5a rel3 other downstream 937089 37584989 ~ 37587002 (+)
G2231371 NA other downstream 1675423 38315783 ~ 38336981 (+)
G2232661 LOC105030512 other downstream 2142378 38790315 ~ 38790675 (+)
G2232855 LOC100380853 other downstream 2164713 38812650 ~ 38813379 (+)
LOC110521001 LOC106584026 other downstream 2526709 39117484 ~ 39202411 (+)

Expression


Co-expression Network