G2232855 (LOC100380853)


Basic Information

Item Value
gene id G2232855
gene name LOC100380853
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 38812650 ~ 38813379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2552955
gtgggctcacgtcctaccctcctcgggtcaccctggggtgacgaggacagtggggagccttcaggggaggtattggtggcctacgttggctaaggacgttaagggttatgtctcctcctgttcagtgtgcgctcagagtaaggctcctaggcaccttcctagagggaagctacaacccctccctgttccacagcggccatggtcacatctgtccatagatttcctaaccgatctcccgccgtctcaggggaacaccacggttctggtaattgtggatcggttctctaagtcctgccgtctcctcccgttgcccggtatccctacagccctacagactgcggaggcgttattcacccatgtcttccggcactacggggtgccggaggacatcgtttctgatcggggcccccaattcacgtcccgggtatggagagcgttcatggaacgtttgggggtctctgtcagcctgacctccggttatcaccccgagagtaatgggcaggtggagagagtgaaccaggaggtgggtaggtttctgcggtcgtattgccaggatcggccaggggagtgggcacgatacattccctgggctgaaatggctcagaactcactacgccactcctctactaacgtgtccccttttcagtgtgtgttggggtaccagccggtcctggcaccatggcatccgagccagaccgaggctcctgcggtggaggaatgggtacagcgc

Function

NR:

description
PREDICTED: transposon Tf2-1 polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2552955 True 730 TUCP 0.59 1 38812650 38813379

Neighbor

gene id symbol gene type direction distance location
LOC110521800 LOC100286690 coding upstream 527553 38230452 ~ 38285097 (+)
LOC118945881 NA coding upstream 551265 38261239 ~ 38261385 (+)
LOC110521799 NA coding upstream 587847 38223112 ~ 38224803 (+)
LOC118945789 NA coding upstream 756010 38038367 ~ 38056640 (+)
insl5a rel3 coding upstream 1225649 37584989 ~ 37587002 (+)
LOC110521807 NA coding downstream 20405 38833784 ~ 38838725 (+)
LOC110521001 LOC106584026 coding downstream 304105 39117484 ~ 39202411 (+)
LOC110521810 LOC106584025 coding downstream 425231 39238610 ~ 39332571 (+)
LOC110521814 dmrt2b coding downstream 899645 39713024 ~ 39722927 (+)
LOC110521815 fam183a coding downstream 946522 39759901 ~ 39761629 (+)
G2232660 NA non-coding upstream 22872 38789534 ~ 38789778 (+)
G2232655 NA non-coding upstream 31826 38780581 ~ 38780824 (+)
G2232648 NA non-coding upstream 41093 38771334 ~ 38771557 (+)
G2232583 pgm1 non-coding upstream 62194 38747444 ~ 38750456 (+)
G2232586 NA non-coding upstream 66116 38746025 ~ 38746534 (+)
G2232856 NA non-coding downstream 1327 38814706 ~ 38878511 (+)
G2232859 NA non-coding downstream 8149 38821528 ~ 38822463 (+)
G2232873 NA non-coding downstream 27208 38840587 ~ 38844285 (+)
G2232661 LOC105030512 other upstream 21975 38790315 ~ 38790675 (+)
G2231371 NA other upstream 475669 38315783 ~ 38336981 (+)
LOC110521770 igfbp-1a2 other upstream 3009682 35800643 ~ 35805071 (+)
LOC110521768 sirt5 other upstream 3077250 35693310 ~ 35735400 (+)
LOC110521817 LOC106584021 other downstream 986894 39800038 ~ 39812756 (+)
pik3r3b LOC106584012 other downstream 1330242 40143590 ~ 40468579 (+)
LOC110521828 LOC106584006 other downstream 2289059 41101017 ~ 41158001 (+)
G2236045 NA other downstream 2572281 41385660 ~ 41385993 (+)

Expression


Co-expression Network