G2234002 (LOC106584020)


Basic Information

Item Value
gene id G2234002
gene name LOC106584020
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 39850597 ~ 39852270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2554219
ttgggtttaattatttatttactcaaTACcaaactaatcacacagaattacacatacacataattaaatcataacttgattacagaTTACGTCatgaaggaaaacgtccctagcgggaaggaacagatatgacagcttgttacacaaaataaaaggggctgggtttgagtgaaagagcgggaagactgaggaacaaagggcgaagctgtgctatcgtaaatacagtatcttatgcattctaaattaccgcccatttggaaaaggaaaatgcaataaatatttactctgagctgcgcttcggtaggttggtggtagatggaaggccgtgttgtccaaccgagtcctttgtcctttgaagaatgtctctgctggtaaagtggatacgttgtagtaacgttgttgtgtggtagatggaatactctgtctgttccttcctaacctgaatttgctaggaggtatcacttctgtagtgaataagagttcaaagttcataccattcgcaaccaaagctcatgctgatgttggcttcgttctgtagttattatctgaaccattctgacatcagaccgccgtcctcacatcctcggaacaggaggttatattgtcgtcaaggctttatatagtaagggagaggagggcgtgtttgaaaagttttacagcccatgtcccttcacaggggcgggccactgattgttttatgaaaacccaaatctcacattttagaagctaaaatcacatttcatcccatcacgaataatttcatattcaaacatttatatTGAATAACAATTcaatgtgaatccgataactctgatgtgtagactttccactgtagagtttatgtcatcttatcattgatgagaatgtctcagatgacaaccgaactgacatcatattcattaagtaccaccgcatatgttcaattggtcggattaccagaatgtagttcatttccccccaccttctgatgttcccagaatctctatgttaaccaagggttttgcaaatgtaacatcagtagggtagagagaggaaaaagggggaagaggtatttatgactatcataaacctacccccaggccaacgtcatgacaacatgCATATATTTAATATCAGCATTGGCCCTAATCAGTGTCCAAATTGGCTacagtaacctctctctctctctctgtatgtatgtctgtctgtctttctctctaattTCTCTCgaccctctttctcccctcccatTCCACCTCTTCTAGCCAATGGAAAATACCatgtcatcctcctcctcctcctgcagtTCCAGTGCCCTCTtagccctctccctctcgctggcTTGTATGTAGTTATCCTCTATGaagccatcatcatcatcctcctcatcctccatgtACATCTCTCCCTGGGGGACAGCAGCAGGGTGGGTGCTCCGTGCCTGTCCCCCATGGTTGTGCATGGAGAAGCCTACCTCCAGGCTGTTGGGGTCACACTGGCTGGCTGTGTCCCCCTCGATCAGCCGGGTGTGACGGTAACTGGCCAGGTAGCGGCGGACCAGCTGGCATTTGGCCAGGACAgcgatgaggagggagagggagatggccGTCACCAGTACTGCTACCAGGTACTGCCAGCTTTTGGAGAAACGGCTCTGACCACCATCCTCAC

Function

NR:

description
type III endosome membrane protein TEMP-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2554219 True 1650 lncRNA 0.45 2 39850597 39852270

Neighbor

gene id symbol gene type direction distance location
LOC110521817 LOC106584021 coding upstream 41947 39800038 ~ 39812756 (+)
LOC110521003 LOC106584022 coding upstream 51115 39772446 ~ 39799482 (+)
trnaa-ugc-194 NA coding upstream 61368 39789157 ~ 39789229 (+)
LOC110521815 fam183a coding upstream 88968 39759901 ~ 39761629 (+)
LOC110521814 dmrt2b coding upstream 127670 39713024 ~ 39722927 (+)
LOC110521820 LOC106584018 coding downstream 25575 39877845 ~ 39906318 (+)
LOC110521821 LOC106584017 coding downstream 59247 39911517 ~ 39918494 (+)
LOC110521822 pr38a coding downstream 68594 39920864 ~ 39924501 (+)
LOC110521823 pomgnt1 coding downstream 78736 39931006 ~ 39957917 (+)
LOC118945792 NA coding downstream 107027 39959297 ~ 39960096 (+)
G2233878 NA non-coding upstream 206730 39643647 ~ 39643867 (+)
G2233874 NA non-coding upstream 209362 39640921 ~ 39641235 (+)
G2233867 NA non-coding upstream 215113 39635264 ~ 39635484 (+)
G2233859 NA non-coding upstream 222630 39627554 ~ 39627967 (+)
G2234003 LOC106584020 non-coding downstream 180 39852450 ~ 39855097 (+)
G2234031 NA non-coding downstream 58728 39910998 ~ 39911462 (+)
G2234224 NA non-coding downstream 77042 39929312 ~ 39929520 (+)
G2234313 LOC100194703 non-coding downstream 247510 40099780 ~ 40100114 (+)
G2234323 NA non-coding downstream 260503 40112773 ~ 40113015 (+)
LOC110521001 LOC106584026 other upstream 673904 39117484 ~ 39202411 (+)
G2232855 LOC100380853 other upstream 1037218 38812650 ~ 38813379 (+)
G2232661 LOC105030512 other upstream 1059922 38790315 ~ 38790675 (+)
G2231371 NA other upstream 1513616 38315783 ~ 38336981 (+)
pik3r3b LOC106584012 other downstream 291351 40143590 ~ 40468579 (+)
LOC110521828 LOC106584006 other downstream 1250168 41101017 ~ 41158001 (+)
G2236045 NA other downstream 1533390 41385660 ~ 41385993 (+)
LOC110521840 LOC106583968 other downstream 2698050 42548328 ~ 42554269 (+)
G2237341 NA other downstream 2877582 42729852 ~ 42730451 (+)

Expression


Co-expression Network