G2234313 (LOC100194703)


Basic Information

Item Value
gene id G2234313
gene name LOC100194703
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 40099780 ~ 40100114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2554565
tggtagggcTCACCTtatcttctccggacaagctttttaccggatgccccaaacaatcggaaaggggattcatcagagaaaatgactttaccccagtcctcagcagtccaatccctgtaccttttgcagaatatcagtctgtccctgatgtttttcctggagagaagtggcttctttgctgcccttcttgacaccaggccatcctccaaaagtcttcgcctcactgtgcgtacagatgcactcacacctgcctgctgccattcctgagcaagctctgtactggtggtgccccgttcccgcagctgaatcaactttaggagacggtcctggcgctt

Function

NR:

description
transposase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2554565 True 335 lncRNA 0.52 1 40099780 40100114

Neighbor

gene id symbol gene type direction distance location
LOC118945792 NA coding upstream 139684 39959297 ~ 39960096 (+)
LOC110521823 pomgnt1 coding upstream 141863 39931006 ~ 39957917 (+)
LOC110521822 pr38a coding upstream 175279 39920864 ~ 39924501 (+)
LOC110521821 LOC106584017 coding upstream 181286 39911517 ~ 39918494 (+)
LOC110521820 LOC106584018 coding upstream 193462 39877845 ~ 39906318 (+)
pik3r3b LOC106584012 coding downstream 43476 40143590 ~ 40468579 (+)
LOC110521828 LOC106584006 coding downstream 1000903 41101017 ~ 41158001 (+)
LOC110521832 LOC106583970 coding downstream 1358767 41458881 ~ 41467520 (+)
LOC110520957 LOC106583970 coding downstream 1377371 41477485 ~ 41478421 (+)
LOC110521005 LOC106560551 coding downstream 1912461 42012575 ~ 42053669 (+)
G2234224 NA non-coding upstream 170260 39929312 ~ 39929520 (+)
G2234031 NA non-coding upstream 188318 39910998 ~ 39911462 (+)
G2234003 LOC106584020 non-coding upstream 244683 39852450 ~ 39855097 (+)
G2234002 LOC106584020 non-coding upstream 247510 39850597 ~ 39852270 (+)
LOC110521817 LOC106584021 non-coding upstream 287024 39800038 ~ 39812756 (+)
G2234323 NA non-coding downstream 12659 40112773 ~ 40113015 (+)
G2234330 NA non-coding downstream 24434 40124548 ~ 40124761 (+)
G2234339 NA non-coding downstream 42207 40142321 ~ 40142561 (+)
G2234345 NA non-coding downstream 48000 40148114 ~ 40148321 (+)
G2234348 NA non-coding downstream 54093 40154207 ~ 40197350 (+)
LOC110521001 LOC106584026 other upstream 923087 39117484 ~ 39202411 (+)
G2232855 LOC100380853 other upstream 1286401 38812650 ~ 38813379 (+)
G2232661 LOC105030512 other upstream 1309105 38790315 ~ 38790675 (+)
G2231371 NA other upstream 1762799 38315783 ~ 38336981 (+)
G2236045 NA other downstream 1285546 41385660 ~ 41385993 (+)
LOC110521840 LOC106583968 other downstream 2450206 42548328 ~ 42554269 (+)
G2237341 NA other downstream 2629738 42729852 ~ 42730451 (+)

Expression


Co-expression Network