G2235584 (LOC106584002)


Basic Information

Item Value
gene id G2235584
gene name LOC106584002
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 41267894 ~ 41281341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2555883
GGGCACAGTTGTTCCAGGTCTTGGTCAAAGGGTCAAAAGCATCACAGTTCTTCAGTCCTTTCTGCCCACAGGGGTCTGACCCTCCCACCACAAACAGCTTATTGTTCAACGAGCAGACACCTGCGTTGCAGCGATTGGTCCGGAGCTCTGCCACCTGAGCCCACGTGTCAGTGTGGGGATCGTAGGTCTCCCCACAGCTCAGCTCGTCTGAGTGACCGTTGGAGCCACCCATCACATACAGCTGACCCATGAGCACGGCCATCTGGAAGCGAGCCCTGGCAGTCCGCATGGGAGCAGTAAAGGTCCAGAGGTCCTCTTTGGGGTCGTAACACTCCACAGTCCTCAGGCACTCCTCCCGGTTATACCCTCCTGCAGCGATGAGCCTGCCGTGCAGGGTGGCAGTGCCCAGGCCAGAGCGGGCGTAGTGCATGGAGGTCAGCGGGTGTTCCTCCAGCTCCTCAGACTGAGCCTCAAAGCTCAGGCTCTTCATCAGACATGGTGTGGCAGAGGGAGAACTCTGGGGAGAGTTGCGACCATGCAGGAAGATCACACACAACACCCCGTCCAGTACGGCCAGACACAGGTAGGTGTTGtctggaagagagatggagaaggagggagggaggtgat
>TU2555889
GGGCACAGTTGTTCCAGGTCTTGGTCAAAGGGTCAAAAGCATCACAGTTCTTCAGTCCTTTCTGCCCACAGGGGTCTGACCCTCCCACCACAAACAGCTTATTGTTCAACGAGCAGACACCTGCGTTGCAGCGATTGGTCCGGAGCTCTGCCACCTGAGCCCACGTGTCAGTGTGGGGATCGTAGGTCTCCCCACAGCTCAGCTCGTCTGAGTGACCGTTGGAGCCACCCATCACATACAGCTGACCCTAAGAGATCAGAGGAGACAAAGAGGCAGGTTTAAGTCAGAAAACTATTGATCAGTCAGGGTCAGACAGGCACCTGTCAATCATAGGAAATGCGGGTTCAAAGGACAGGGGTGTGTTGTACCATGAGCACGGCCATCTGGAAGCGAGCCCTGGCAGTCCGCATGGGAGCAGTAAAGGTCCAGAGGTCCTCTTTGGGGTCGTAACACTCCACAGTCCTCAGGCACTCCTCCCGGTTATACCCTCCTGCAGCGATGAGCCTGCCGTGCAGGGTGGCAGTGCCCAGGCCAGAGCGGGCGTAGTGCATGGAGGTCAGCGGGTGTTCCTCCAGCTCCTCAGACTGAGCCTCAAAGCTCAGGCTCTTCATCAGACATGGTGTGGCAGAGGGAGAACTCTGGGGAGAGTTGCGACCATGCAGGAAGATCACACACAACACCCCGTCCAGTACGGCCAGACACAGGTAGGTGTTGtTGGTGGTCTTCTCGGAAGCAATGTACTTCCACTCTCTCCTGCAGGGTTTGGGTGTGTTGGAGGCCAAGCCGGAGGGTGAAGAGCTGCCGGAGGTGGAGGAGCTCGGCTGTCTCTGGGTGTTGCTGTTCTCACGGGGGGGCTTCTTCTGAACCAACTGCATGTGGTCCTCCTCCGCACCAACCCCAAACAGCCCAGGTTCCTCAATGATGAGTGCGCCATCGAGCAGCTTGTGGTCGGCTGAGTAGTACAACGTTTGCACCTCCTCCATCAGTTTATCCAGTTGGTCTCCATTCTCCCACAGTCTGCGCTGGACCCAGTTAAGCACCTTGGAGTAGAGCTTGCCATTGCTGGGCAGGCTCAAGCTGTCTTCCAGCATTACTTCTAATTTGAGGCGGGGGAGTTTGAAGAAGTCCTCCTGCTCAGAGACCTCCAGCAGGTGTTCTTGGATGTAGATGTCGATCTTGGAGAGCATGCGACCGTCTCCCATGCTGCTGGAAAAGTTACGAAAGGAGATGGCACTATAGGATTCTATCTTCGACAGCAGGTAGTTGCCACAGATCTGCTTTACTCGTTCCATCTTTAGCCTTTTGGCTGCAGTGTAGACATCCTTAACCAACTCCTTGTCTGCCTTCAACTGGGCAGTGTAGGCGTAGTTAAGCAGGATCTCCACAGCCTCTGGGTCAAGGTCATCGAAGGTAACGTGGGACACGCCGTGAGGTTCGATGTCGCTGTTGAAGATCTCAAACAGGTAGGGGCTACAGCAGGCCAGCACGGCACGGTGAGCCATCAACTCATGACCACACACCTGCAGTCTCACGTCACAGAACTGTCCACTCTTTCTCAGGGCATTCATCTTGGCTACGGTGGAATCCAAGAGACTCTCATCTTCAAAGAGCAGATAACCATTGGGAATCATCTCACTGTTTAATGTTGGGGGCTGAGCCTAATACAGGATTATGTAACTCCAGGGACTGCTACTGGTGTCCGTAGAGGGCAGGGACCAATGGAAGAGAAGGCAGGCAAAGTAGACAGAGACCACAAGGGAACCCAAGTCTTATTAACcagtggaggaggaagggggcTGTCAGAAGTAATGCCAGTTGACCAAAGGGATGTGAGCCGGGGGTAGGGGGGCAGCCGCACCGGTGCAAACTGTCAGGCTTGAAGCGACTGTAATCAAGTCCTCAGGATCCCGTTGGCTATAGAGTCAAACTTTTTCTGTGTTGGTCGTGC

Function

NR:

description
influenza virus NS1A-binding protein homolog A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2555883 False 630 lncRNA 0.59 3 41267894 41268768
TU2555889 True 1948 lncRNA 0.54 10 41267894 41281341

Neighbor

gene id symbol gene type direction distance location
LOC110521828 LOC106584006 coding upstream 109893 41101017 ~ 41158001 (+)
pik3r3b LOC106584012 coding upstream 799315 40143590 ~ 40468579 (+)
LOC118945792 NA coding upstream 1307798 39959297 ~ 39960096 (+)
LOC110521823 pomgnt1 coding upstream 1309977 39931006 ~ 39957917 (+)
LOC110521822 pr38a coding upstream 1343393 39920864 ~ 39924501 (+)
LOC110521832 LOC106583970 coding downstream 177540 41458881 ~ 41467520 (+)
LOC110520957 LOC106583970 coding downstream 196144 41477485 ~ 41478421 (+)
LOC110521005 LOC106560551 coding downstream 731234 42012575 ~ 42053669 (+)
LOC110521838 LOC106583933 coding downstream 1044918 42326259 ~ 42506540 (+)
LOC110521840 LOC106583968 coding downstream 1266987 42548328 ~ 42554269 (+)
G2235525 NA non-coding upstream 179616 41088064 ~ 41088278 (+)
G2235510 NA non-coding upstream 195606 41071952 ~ 41072288 (+)
G2235509 NA non-coding upstream 200098 41067542 ~ 41067796 (+)
G2235502 NA non-coding upstream 213888 41053721 ~ 41054006 (+)
G2235936 NA non-coding downstream 19613 41300954 ~ 41301292 (+)
G2235948 NA non-coding downstream 26761 41308102 ~ 41308373 (+)
G2236056 LOC106583972 non-coding downstream 141419 41422760 ~ 41423594 (+)
G2236181 NA non-coding downstream 214176 41495517 ~ 41495787 (+)
G2236226 NA non-coding downstream 271170 41552511 ~ 41553042 (+)
LOC110521817 LOC106584021 other upstream 1459844 39800038 ~ 39812756 (+)
LOC110521001 LOC106584026 other upstream 2091201 39117484 ~ 39202411 (+)
G2232855 LOC100380853 other upstream 2454515 38812650 ~ 38813379 (+)
G2236045 NA other downstream 104319 41385660 ~ 41385993 (+)
G2237341 NA other downstream 1448511 42729852 ~ 42730451 (+)
G2238623 adgrl4 other downstream 2159512 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 2327240 43608581 ~ 43623303 (+)

Expression


Co-expression Network