G2236056 (LOC106583972)


Basic Information

Item Value
gene id G2236056
gene name LOC106583972
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 41422760 ~ 41423594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2556400
cacacagacacacacacacacgctcactgaCCTGCGAACATGAGCTCGGACACGTCTGGTTTGACGTGCAGACAGGTGAACAGAGGGAGAGGACACTGGCCCTCGTTCACCTTCTCCTGCAACTCACTCAGCTTTGTGTCCATCCTAGCAGGGATGAGTGTCTCTCCGATGAGCATGCCGAAGATGTCAGTGAAGGTGACGGGCTGTCCGTTGGCCTTCTTGCTCCACAGAGACTGGATGTAGTTGGTGATGTGCTGGGGCAATAGCAGTCTCAGAGGGTTACTGCTCACTCTTTTCATCAGCTCCGCGTTGATCTCCTTAGGACCCTTAGAGGGGAACTCTGGGTGAGAGAACAGGGTCGACATGTACCAGGTGGATCCAGAGAGGCCAGCAATGTAGGTGGCACAGTCCAGGACCCCAGACTCATACAGGCCCTTCATAACCCCAGAGAAGCCCACCATGGCCCTGAAGCCTCCC

Function

NR:

description
cytosolic phospholipase A2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2556400 True 477 lncRNA 0.56 3 41422760 41423594

Neighbor

gene id symbol gene type direction distance location
LOC110521828 LOC106584006 coding upstream 264759 41101017 ~ 41158001 (+)
pik3r3b LOC106584012 coding upstream 954181 40143590 ~ 40468579 (+)
LOC118945792 NA coding upstream 1462664 39959297 ~ 39960096 (+)
LOC110521823 pomgnt1 coding upstream 1464843 39931006 ~ 39957917 (+)
LOC110521822 pr38a coding upstream 1498259 39920864 ~ 39924501 (+)
LOC110521832 LOC106583970 coding downstream 35287 41458881 ~ 41467520 (+)
LOC110520957 LOC106583970 coding downstream 53891 41477485 ~ 41478421 (+)
LOC110521005 LOC106560551 coding downstream 588981 42012575 ~ 42053669 (+)
LOC110521838 LOC106583933 coding downstream 902665 42326259 ~ 42506540 (+)
LOC110521840 LOC106583968 coding downstream 1124734 42548328 ~ 42554269 (+)
G2235948 NA non-coding upstream 114387 41308102 ~ 41308373 (+)
G2235936 NA non-coding upstream 121468 41300954 ~ 41301292 (+)
G2235584 LOC106584002 non-coding upstream 141419 41267894 ~ 41281341 (+)
G2235525 NA non-coding upstream 334482 41088064 ~ 41088278 (+)
G2236181 NA non-coding downstream 71923 41495517 ~ 41495787 (+)
G2236226 NA non-coding downstream 128917 41552511 ~ 41553042 (+)
G2236227 NA non-coding downstream 129491 41553085 ~ 41554453 (+)
G2236228 NA non-coding downstream 130869 41554463 ~ 41554733 (+)
G2236232 NA non-coding downstream 136761 41560355 ~ 41560600 (+)
G2236045 NA other upstream 36767 41385660 ~ 41385993 (+)
LOC110521817 LOC106584021 other upstream 1614710 39800038 ~ 39812756 (+)
LOC110521001 LOC106584026 other upstream 2246067 39117484 ~ 39202411 (+)
G2237341 NA other downstream 1306258 42729852 ~ 42730451 (+)
G2238623 adgrl4 other downstream 2017259 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 2184987 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 2976291 44399885 ~ 44427686 (+)

Expression


Co-expression Network