G2236233


Basic Information

Item Value
gene id G2236233
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 41561039 ~ 41561903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2556586
atattccttttgttcaataaagtctctctttatatccgaaaacctctgttttgtttgcgtgttttcttcagtaatccacagtctcaaacgcagtcacaacaggcagacaaaaaaatctaaattgtatccgtaaagttcatagaaacatgtcaaacgatgtttatattcaatcctcttgtttttagcctaaataatcgataatatttcagactgctcttacaccctcatttttcagaatacaagcctgaaacaatttctaaagactcctgacatctagtggaaggcataggaactgcaatttgagtcctaatcAATGGaaactgtaatggcattgaatagaagaaaaataaaaaatcctacttcctgaatgtatttttctcaggttttcgcctgccaaatcagttctgttatactcacagaccttattttaacagttttgtgaactttagagtgttttctatccaaatatattacatgcatatcctatcttctgggcctgagtagaaggcagtttaatttgggaaTGCTTTTCATCCataattccaaatgctgccccctacactTGAGAagttcttagggctgcaatcccgttaatgggatgatatgacaacagccagtgaaagtgcagggcgccaaattcaaaacaacataaatctcataattacaattcctcatataccgttttaaaggttgttgtttttttgcaccagagtgtccgatttcaaataggctttacagcgaaagcaccacaaatgattatgttaggtcaccaccagccacagaaaaacacagccatttttccagccaaagagaggagtcacaaaagcacaaatagacaaaatgaatcactaacctttgatgatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2556586 True 865 lncRNA 0.36 1 41561039 41561903

Neighbor

gene id symbol gene type direction distance location
LOC110520957 LOC106583970 coding upstream 82618 41477485 ~ 41478421 (+)
LOC110521832 LOC106583970 coding upstream 93519 41458881 ~ 41467520 (+)
LOC110521828 LOC106584006 coding upstream 403038 41101017 ~ 41158001 (+)
pik3r3b LOC106584012 coding upstream 1092460 40143590 ~ 40468579 (+)
LOC118945792 NA coding upstream 1600943 39959297 ~ 39960096 (+)
LOC110521005 LOC106560551 coding downstream 450672 42012575 ~ 42053669 (+)
LOC110521838 LOC106583933 coding downstream 764356 42326259 ~ 42506540 (+)
LOC110521840 LOC106583968 coding downstream 986425 42548328 ~ 42554269 (+)
LOC110521842 LOC105011996 coding downstream 1094253 42656156 ~ 42664378 (+)
LOC110521843 pde6d coding downstream 1123910 42685813 ~ 42692514 (+)
G2236232 NA non-coding upstream 439 41560355 ~ 41560600 (+)
G2236228 NA non-coding upstream 6306 41554463 ~ 41554733 (+)
G2236227 NA non-coding upstream 6586 41553085 ~ 41554453 (+)
G2236226 NA non-coding upstream 7997 41552511 ~ 41553042 (+)
G2236181 NA non-coding upstream 65252 41495517 ~ 41495787 (+)
G2236234 NA non-coding downstream 312 41562215 ~ 41562453 (+)
G2236565 NA non-coding downstream 225939 41787842 ~ 41798638 (+)
G2236769 NA non-coding downstream 357928 41919831 ~ 41921342 (+)
G2236770 NA non-coding downstream 359494 41921397 ~ 41921847 (+)
G2236773 NA non-coding downstream 365063 41926966 ~ 41927303 (+)
G2236045 NA other upstream 175046 41385660 ~ 41385993 (+)
LOC110521817 LOC106584021 other upstream 1752989 39800038 ~ 39812756 (+)
LOC110521001 LOC106584026 other upstream 2384346 39117484 ~ 39202411 (+)
G2237341 NA other downstream 1167949 42729852 ~ 42730451 (+)
G2238623 adgrl4 other downstream 1878950 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 2046678 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 2837982 44399885 ~ 44427686 (+)

Expression


Co-expression Network