G2236793


Basic Information

Item Value
gene id G2236793
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 41937936 ~ 41938156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2557176
ACAAAAATTAATAAACTGAGGGTGAGAGTCAGGTTGGATCTTTTCCCCAGTTTATGGATAGACAACTTAATCCAAACATTCCCTTTCTTTGGGCCAACAACAGACGAATGGTGCTTTTGCTGTGGAATATCAAATCCGCATCAAACTAACTTTTTACTGATAGAGGGTTGTTATATAaaaaacatgtacagtaccagtcaaaagtttggacacacctactc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2557176 True 221 lncRNA 0.38 1 41937936 41938156

Neighbor

gene id symbol gene type direction distance location
LOC110520957 LOC106583970 coding upstream 459515 41477485 ~ 41478421 (+)
LOC110521832 LOC106583970 coding upstream 470416 41458881 ~ 41467520 (+)
LOC110521828 LOC106584006 coding upstream 779935 41101017 ~ 41158001 (+)
pik3r3b LOC106584012 coding upstream 1469357 40143590 ~ 40468579 (+)
LOC118945792 NA coding upstream 1977840 39959297 ~ 39960096 (+)
LOC110521005 LOC106560551 coding downstream 74419 42012575 ~ 42053669 (+)
LOC110521838 LOC106583933 coding downstream 388103 42326259 ~ 42506540 (+)
LOC110521840 LOC106583968 coding downstream 610172 42548328 ~ 42554269 (+)
LOC110521842 LOC105011996 coding downstream 718000 42656156 ~ 42664378 (+)
LOC110521843 pde6d coding downstream 747657 42685813 ~ 42692514 (+)
G2236773 NA non-coding upstream 10633 41926966 ~ 41927303 (+)
G2236770 NA non-coding upstream 16089 41921397 ~ 41921847 (+)
G2236769 NA non-coding upstream 16594 41919831 ~ 41921342 (+)
G2236565 NA non-coding upstream 139298 41787842 ~ 41798638 (+)
G2236234 NA non-coding upstream 375483 41562215 ~ 41562453 (+)
G2236801 NA non-coding downstream 5107 41943263 ~ 41943463 (+)
G2236804 NA non-coding downstream 7843 41945999 ~ 41946237 (+)
G2236851 NA non-coding downstream 41743 41979899 ~ 41981635 (+)
G2236904 LOC106613263 non-coding downstream 84310 42022466 ~ 42022751 (+)
G2236956 NA non-coding downstream 155153 42093309 ~ 42101005 (+)
G2236045 NA other upstream 551943 41385660 ~ 41385993 (+)
LOC110521817 LOC106584021 other upstream 2129886 39800038 ~ 39812756 (+)
LOC110521001 LOC106584026 other upstream 2761243 39117484 ~ 39202411 (+)
G2237341 NA other downstream 791696 42729852 ~ 42730451 (+)
G2238623 adgrl4 other downstream 1502697 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 1670425 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 2461729 44399885 ~ 44427686 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G214027 NA unknown CI01000050 null 2557166 ~ 2572902 (-)
eurasian perch (Perca fluviatilis) G179315 NA non-coding NC_053128.1 CM020925.1 30855532 ~ 30880760 (-)