G2238021 (LOC106583956)


Basic Information

Item Value
gene id G2238021
gene name LOC106583956
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43152399 ~ 43154895 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2558505
CCGgtagaaataaaaacatttttatttgtctTTTCATTTACATAAGCAAATTCATACTTTCTCATATTTATATTTTGGTTGCTAAAGATGCAACCCCAGTCATTCGTTCAATCAGTTCGATATTTATGGACACCACCTTGTCGTTCGTTCTTTATGTTCTGTTGGTATGCTCGCTGGCAAAATTAATTTCCCTTGCTTtctaactagccagctagctacggCTAAAACAGTCACGACATCTGGGCCAGAATAACAGCAACGTagctgttttctattgacattaaTTCAGATACATCCATAACTATGAGCTGATGATGCCTGAATTTGCCTGGCATAGCTAGAAAAGTTTGCCATCTCATCAGGACACTGTTCATTACGAGGAGACCACACTGCATATCAAAAACTAGGCTAGAAGCTATCTAAATGTTTTGTTTCCCAGCAAACCTGCCAATATGACAACCAAAAAAATAATATTAGTTGCTGAAAATAGCTAGTCAAACTAGAAacgtgggaggatttgacagcatagcgtCACTTGTGGACCTGTgtttacaatgtatccaatttcGTTTTGTGTGGTTGTTGGTTTAGCTTTCTGTAACTTTGTAGCAAGTACGGTCTGCATATGTAAATTAGAAATAAGGtatgcagttgtaaatgagaacttgttctcaactggcctacctggttaaataaaggtgaaataaaaaaatgtaggcGCTTATTGCGTCATGATTGCAAGGTGTCCCAATATCTTTTCCAACTGCCTCGATATCTTTTTCAACTGTGCCTTTACCTGGTTTTAATGTCCATCctagaatgcccttctagccaatcagaaatGAGTATTCAACAACGCTGTGGTATAATATGacattaactcctgcagaattatgcATTTCTTGAAGTGaaattacacaacaaatgttaatGTTGTCTCAGGAACAGGAgtctcctgctgtccccataggagaacacgTTGAATGATGGTTcaaagtagaacccttttggatccaagtagaaccctttccacagagggttctacatggaacacaaaatggttctacctggaaccaaaaatggttttacctggaaccaaaaagggttctcctatggggacagtcgatGAACCCTTTTGGAATCGTTTTTTTCGAAGAATGTAGAGCTGTACGATTATTCAAATTCATATCAAAATCGCAATATTGACATGTGCAATATCCATTTTGCAAGAGATTCATATTGGGTGCAATATTTTGAACCGCCACTAAGCTGCGTGTCACatctgtttttattattattattatctgttTCTTAATATAAATCATTCTATTTCACTGATTCCAAAAGTTCTAGATCTATATCGCAAGCCAAAATCGCAATTGCaatatttggtaaaaaaaaatcgCAATGATATTTTTTGCCGATATTGTGCAGCCCTAGTCACTAGTACCCCTGGGCACAACCATCAGCTCTGGGGTCTGATCCTGCCCACAACACCCTAACATTGGGCTCTGCATCCTGGGTCGACAGGTTCCACCAATCCCCTACTGAGATGACCTGGCCTCGCCCAAACTGACTCCGGTCATGGCCAGTGATAGGCCAGCAAACCACATGGCTACGCTTTTCCAGGTCTTCAGCAACACCCTCGTCAACACCCACCTCCAAATTGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2558505 True 1671 lncRNA 0.40 3 43152399 43154895

Neighbor

gene id symbol gene type direction distance location
LOC110521849 LOC106583958 coding upstream 25317 43104346 ~ 43127082 (+)
LOC110521006 NA coding upstream 48243 43098446 ~ 43104156 (+)
LOC110521846 LOC106583961 coding upstream 135370 42829778 ~ 43017029 (+)
LOC110521845 LOC106583964 coding upstream 369288 42778403 ~ 42783111 (+)
LOC110521844 phb2 coding upstream 447133 42693865 ~ 42705266 (+)
LOC110521852 LOC106560595 coding downstream 28438 43183333 ~ 43189752 (+)
LOC110521855 rpl36 coding downstream 148943 43303838 ~ 43317446 (+)
zranb2 zranb2 coding downstream 246289 43401184 ~ 43414113 (+)
LOC110513710 LOC100136747 coding downstream 381329 43536224 ~ 43546571 (+)
LOC110519394 LOC100136747 coding downstream 396755 43551650 ~ 43561525 (+)
G2238055 NA non-coding upstream 1998 43150201 ~ 43150401 (+)
G2238038 NA non-coding upstream 54778 43097399 ~ 43097621 (+)
G2237974 NA non-coding upstream 86786 43064375 ~ 43065613 (+)
G2237991 NA non-coding upstream 108242 43043944 ~ 43044157 (+)
G2237983 NA non-coding upstream 120374 43031821 ~ 43032025 (+)
G2238067 NA non-coding downstream 38748 43193643 ~ 43196720 (+)
G2238147 NA non-coding downstream 151515 43306410 ~ 43362850 (+)
G2238634 NA non-coding downstream 304228 43459123 ~ 43518012 (+)
G2238664 NA non-coding downstream 341568 43496463 ~ 43496710 (+)
G2238687 NA non-coding downstream 422406 43577301 ~ 43592677 (+)
G2237341 NA other upstream 421948 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 599213 42548328 ~ 42554269 (+)
G2236045 NA other upstream 1766406 41385660 ~ 41385993 (+)
LOC110521828 LOC106584006 other upstream 2031309 41101017 ~ 41158001 (+)
pik3r3b LOC106584012 other upstream 3007617 40143590 ~ 40468579 (+)
G2238623 adgrl4 other downstream 285958 43440853 ~ 43465829 (+)
G2238671 LOC100136747 other downstream 453686 43608581 ~ 43623303 (+)
G2239435 LOC106583900 other downstream 1244990 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 1401299 44555495 ~ 44563618 (+)
G2239510 NA other downstream 1419961 44574856 ~ 44575278 (+)

Expression


Co-expression Network