Gene
RNA
| Item | Value |
|---|---|
| gene id | G2239347 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050570.1 |
| NCBI id | CM025857.1 |
| chromosome length | 46327593 |
| location | 44214872 ~ 44215154 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tc3 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2560007 | True | 283 | lncRNA | 0.42 | 1 | 44214872 | 44215154 |
44,212,400
44,212,800
44,213,200
44,213,600
44,214,000
44,214,400
44,214,800
44,215,200
44,215,600
44,216,000
44,216,400
44,216,800
NC_050570.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110521879 | LOC106600749 | coding | upstream | 8402 | 44197377 ~ 44206470 (+) |
| LOC110521878 | mvp | coding | upstream | 18536 | 44169930 ~ 44196336 (+) |
| LOC110521877 | LOC106583943 | coding | upstream | 52183 | 44146045 ~ 44162689 (+) |
| LOC110521876 | LOC106583944 | coding | upstream | 69424 | 44124407 ~ 44145448 (+) |
| LOC110521874 | LOC106583945 | coding | upstream | 90589 | 44113767 ~ 44124283 (+) |
| LOC110521880 | LOC106583941 | coding | downstream | 6241 | 44221395 ~ 44231315 (+) |
| LOC110521881 | LOC106583940 | coding | downstream | 16405 | 44231559 ~ 44234933 (+) |
| LOC110521882 | LOC106584009 | coding | downstream | 31688 | 44246842 ~ 44248418 (+) |
| LOC110521884 | sgf29 | coding | downstream | 45991 | 44261145 ~ 44269206 (+) |
| LOC110521885 | LOC106583937 | coding | downstream | 57395 | 44272549 ~ 44289275 (+) |
| G2239346 | NA | non-coding | upstream | 1067 | 44213476 ~ 44213805 (+) |
| G2239314 | NA | non-coding | upstream | 105050 | 44109406 ~ 44109822 (+) |
| G2239312 | NA | non-coding | upstream | 107478 | 44107109 ~ 44107394 (+) |
| LOC110521011 | LOC106583946 | non-coding | upstream | 113979 | 44062053 ~ 44100935 (+) |
| G2239280 | NA | non-coding | upstream | 155057 | 44059590 ~ 44059815 (+) |
| G2239350 | NA | non-coding | downstream | 4312 | 44219466 ~ 44219671 (+) |
| G2239363 | NA | non-coding | downstream | 26519 | 44241673 ~ 44242010 (+) |
| G2239365 | NA | non-coding | downstream | 28163 | 44243317 ~ 44243526 (+) |
| G2239367 | NA | non-coding | downstream | 29445 | 44244599 ~ 44244832 (+) |
| G2238671 | LOC100136747 | other | upstream | 591569 | 43608581 ~ 43623303 (+) |
| G2238623 | adgrl4 | other | upstream | 749043 | 43440853 ~ 43465829 (+) |
| G2237341 | NA | other | upstream | 1484421 | 42729852 ~ 42730451 (+) |
| LOC110521840 | LOC106583968 | other | upstream | 1661686 | 42548328 ~ 42554269 (+) |
| G2236045 | NA | other | upstream | 2828879 | 41385660 ~ 41385993 (+) |
| G2239435 | LOC106583900 | other | downstream | 184731 | 44399885 ~ 44427686 (+) |
| LOC110521895 | LOC103040367 | other | downstream | 341040 | 44555495 ~ 44563618 (+) |
| G2239510 | NA | other | downstream | 359702 | 44574856 ~ 44575278 (+) |
| G2239933 | NA | other | downstream | 638547 | 44853478 ~ 44860893 (+) |
| G2240165 | NA | other | downstream | 749616 | 44964770 ~ 44965537 (+) |
