G2239372


Basic Information

Item Value
gene id G2239372
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44253441 ~ 44255957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2560034
AATCACATTTATTATTTTGGATTTGTGTGCCCATGATAACTGTTTTCAACCCATAATATAAGGAGACATGAAATGTTACGCAGGCATATTTCTGAGATCTCTATACAAAAACACTGTCCAACAGCTAGATCCAAGATTCTTACAGAGTTTAAGTTCAATGTCTAATTTAACTGATTACTTAACTATAACTTACTCTTTTTTCATGATGGGAATAACATAACATGCTCCACCAAAGGCTTTTGAAAAAAAAATGGGTGTTAGATGATACTGGCAGCCTTTTTATATCAGTTTCCCTTTTAGAAGACCATGGAGCTCAAGGACACACACTTTGTGAGTGCATTTGATAGCAAATTTTGTTTTTGCAATTTAGAAATAGGGAATTACTTTTAAAACAATACACAATCTAACTGTCATGTAGGCTATATCTCCTTGAAATATATCTGTGAAACTAACCTAGTATAAAAACCCTGCCTAACATCAACTAATTTCAGCTCAAGGGTAGCCTACATTTTCAGACGCAAAGAGATGCAAAGTACCAGACTTAAGTTATTTTCTCATTATTCATTTAGTTTAAGCAGTTGAACGAGCAGTCAAGGAAATTGCTGTTCTTTTACATTTTCCTTTCTTTGTCAAGGGTTCTTCAAATAGTACATTTCTTGACAATAACCCTTAATTCTTTGGCACAAATGTATTTTCTAAACTAGAGCATTCCCAAAGAAAGGACTTTAACTTGACACAAATCGGTTACTGCCACCTATTGGCTTGTTTGAAGATTGCAGCCCATGACACCTTCCATGAAGACAAATTCAGAATTAAAGATGTCCTCCAGTGATGTTGGAAAAGTAATATCCCAAGTATAAAgacagtaaagtacacacaccAAAAGGTAAAAATAGGTTTTAAGCAAAATAGGGTTTAGACAACTGCAAATTTCAAGGAATAGGGCATACAAGGAGTTGGTTGGATGGGAAGTTGTGACGTCAGCCTCAGCCTTGCTTGAGGAACACTAGAGGAAAGCCCACTCCCGTGCCAtgtcatgacttacctggacAACCTATTGAGATGAACCTTTTGTTAATAAGTAATTCAGGTGATAAATGAGttgaaaaggagactggagtaaCACTTTAAACCTAGACTTAATACAATTTATGAAAGCATTTATTTTCAAAACACTTTGTAAAATAAATCAATTTTAAGAACCTCTTTGCTTTAAAAAAACATTAAGTGACAAATATCATCAATTAAGACTTAAAAACAAAACCACATTGATACTGAAACACAATGCAGCCTGCAACCACTCCCATTACTCCCCACTTGTTTGGGAAGGTCGTCCAGAAGACCGCTTGCACGGTGGTCTACATCACCTTCAGTGGAGGTCTACCCATGACTGAGGTGAACAACCAATATGGGGGCCACTCCCACTCCATACCATCAGCTCTATGAAGGAGAGGACTGAAATCCCCCTTCACTGACGCTAGAGTCAAACTCATTGGCAGCATGTGACCCGTCCTCATATTCACCCCTCTCTACATTGGAGTTCACCGTCTGTCTGCCCATCTTGTTTTGTCACCAAGGCGGCCATGGTCGGTTGCCAGTGTTAGCCGTCCGATTTGCCCTCCATTTAGTCACTCCTTGGCCTTCTTTTCAGTGTTCTGAAGTTTCTCTATGAGCTTGCGCTCGTGGCCTCCGGGGTTGGGTCGGTTGGTATTGTCGACGGCTTCCTTCTTTGACCTCCCCTTGCGGCTAGCGCCACTTGTGTATTTTTCTGAAAGGTTGTAGTATTCATATTCGTCGTAGTGTTGTTCTTCAAAGTGGGTTGGCTCAACATTCTTCACGTCTACGAAACTTGCCATAGCGACGCTTCTATAACTTTAGAAAGCAGTTATTTTTCCACGGGTGTTTCTCTTTCTTTCAACTCTGGAAATGAGTGGTTTTCTGCACTTGCCCATGTGCTTAATAAAGCATGGTcgctcctcc

Function

NR:

description
nuclear protein 1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2560034 True 1980 lncRNA 0.40 3 44253441 44255957

Neighbor

gene id symbol gene type direction distance location
LOC110521882 LOC106584009 coding upstream 5088 44246842 ~ 44248418 (+)
LOC110521881 LOC106583940 coding upstream 18508 44231559 ~ 44234933 (+)
LOC110521880 LOC106583941 coding upstream 22126 44221395 ~ 44231315 (+)
LOC110521879 LOC106600749 coding upstream 46971 44197377 ~ 44206470 (+)
LOC110521878 mvp coding upstream 57105 44169930 ~ 44196336 (+)
LOC110521884 sgf29 coding downstream 5188 44261145 ~ 44269206 (+)
LOC110521885 LOC106583937 coding downstream 16592 44272549 ~ 44289275 (+)
lat NA coding downstream 34479 44290436 ~ 44293436 (+)
LOC110521889 rabep2 coding downstream 164565 44420522 ~ 44431709 (+)
LOC110521892 mk03 coding downstream 260134 44516091 ~ 44531384 (+)
G2239367 NA non-coding upstream 8609 44244599 ~ 44244832 (+)
G2239365 NA non-coding upstream 9915 44243317 ~ 44243526 (+)
G2239363 NA non-coding upstream 11431 44241673 ~ 44242010 (+)
G2239350 NA non-coding upstream 33770 44219466 ~ 44219671 (+)
G2239354 NA non-coding downstream 15512 44271469 ~ 44272060 (+)
G2239409 NA non-coding downstream 92948 44348905 ~ 44350220 (+)
G2239414 NA non-coding downstream 117088 44373045 ~ 44374669 (+)
G2239416 NA non-coding downstream 121051 44377008 ~ 44378792 (+)
G2238671 LOC100136747 other upstream 630138 43608581 ~ 43623303 (+)
G2238623 adgrl4 other upstream 787612 43440853 ~ 43465829 (+)
G2237341 NA other upstream 1522990 42729852 ~ 42730451 (+)
LOC110521840 LOC106583968 other upstream 1700255 42548328 ~ 42554269 (+)
G2236045 NA other upstream 2867448 41385660 ~ 41385993 (+)
G2239435 LOC106583900 other downstream 143928 44399885 ~ 44427686 (+)
LOC110521895 LOC103040367 other downstream 300237 44555495 ~ 44563618 (+)
G2239510 NA other downstream 318899 44574856 ~ 44575278 (+)
G2239933 NA other downstream 597744 44853478 ~ 44860893 (+)
G2240165 NA other downstream 708813 44964770 ~ 44965537 (+)

Expression


Co-expression Network