G2239956 (LOC106583913)


Basic Information

Item Value
gene id G2239956
gene name LOC106583913
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44830885 ~ 44835200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2560732
cacacaaacacacacttgtaTACCTACAAACATATTTCAAAAAATGAATGGTTTCTTACCTGAGCTGTTGCCATGGTGAGAGTGATAGACACCTGTGTTGAAGGAGGTGCTGAGGGGGGCGTGTGCCTGAGAACAGGAAGTCCCGCCCCCTGACCTCTTCTGATTGCGCaacttctcctccctcctccatttgGCTCGCCGATTGGAAAACCACACCTGAATGCGAGCCTCTGGAAGGTCGATTTTAGCTGCCAATCTCTCTCTGGCAAAGACATCTGGGTAATGTGTCCGTTCAAACTCTTTCTCCAGCGCGTCAATCTGCTCCTGGGTGAAACTAGTGCGATTCCTCTGGAGCTTTCTCTTCAGCTGGAGGTGATGCTGTGCGTCCtctgcctcatccctctctctttgcactccttctcctcctcctaccatCCGCACACTCACGTCATCCACCACACAGCCATCAGTTGTTTGGCCCAGTCCAGCTGGAGGTGTTCTGTAGATTCAGCATGCTGAGTTTCTCACACATAACACTTCCCCTTCACCTTCTCTCCTCCAATAAGAACACAGATCAGAACTACTCAAGAGAGAGGATGCCGATGGTTTTCCAAACTTGCGTTTCTCTAGTCTTGCCACTGTTTCTAaggtttctctcttcctcctcttcctctctttcgtTATACCGTCATCCCTCTCCCCTGACCTCGCTTTTGTTGACTGTGTGTGCAAAGCAG

Function

NR:

description
PREDICTED: paired box protein Pax-6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2560732 True 737 lncRNA 0.50 5 44830885 44835200

Neighbor

gene id symbol gene type direction distance location
LOC110521908 LOC106583914 coding upstream 27360 44784210 ~ 44803525 (+)
LOC110521907 LOC106583912 coding upstream 47802 44779950 ~ 44783083 (+)
LOC110521906 NA coding upstream 52008 44776552 ~ 44778877 (+)
LOC110521905 ppp4c coding upstream 62568 44738189 ~ 44768317 (+)
LOC110521904 aldoa coding upstream 97575 44721937 ~ 44733310 (+)
LOC110521014 rcn3 coding downstream 3187 44838387 ~ 44848354 (+)
LOC110521916 prmt1 coding downstream 296560 45131760 ~ 45139316 (+)
LOC110521917 LOC106583923 coding downstream 315166 45150366 ~ 45170704 (+)
LOC118945915 NA coding downstream 322330 45157530 ~ 45157608 (+)
LOC110521918 LOC106583924 coding downstream 470314 45305514 ~ 45307830 (+)
G2239953 NA non-coding upstream 3698 44826962 ~ 44827187 (+)
G2239950 NA non-coding upstream 7457 44823184 ~ 44823428 (+)
G2239925 NA non-coding upstream 57376 44773266 ~ 44773509 (+)
G2239920 NA non-coding upstream 65223 44765180 ~ 44765662 (+)
G2239865 rnf25 non-coding upstream 158309 44658885 ~ 44672576 (+)
G2239966 NA non-coding downstream 14681 44849881 ~ 44850130 (+)
G2239933 NA non-coding downstream 18278 44853478 ~ 44860893 (+)
G2239969 NA non-coding downstream 28959 44864159 ~ 44864502 (+)
G2239970 NA non-coding downstream 32464 44867664 ~ 44867870 (+)
G2239971 NA non-coding downstream 32851 44868051 ~ 44868309 (+)
G2239510 NA other upstream 255607 44574856 ~ 44575278 (+)
LOC110521895 LOC103040367 other upstream 267267 44555495 ~ 44563618 (+)
G2239435 LOC106583900 other upstream 403199 44399885 ~ 44427686 (+)
G2238671 LOC100136747 other upstream 1207582 43608581 ~ 43623303 (+)
G2238623 adgrl4 other upstream 1365056 43440853 ~ 43465829 (+)
G2240165 NA other downstream 129570 44964770 ~ 44965537 (+)
G2240221 LOC106583920 other downstream 222817 45058017 ~ 45125710 (+)
LOC110521020 LOC107658484 other downstream 1326004 46161172 ~ 46190655 (+)

Expression


Co-expression Network