G2240221 (LOC106583920)


Basic Information

Item Value
gene id G2240221
gene name LOC106583920
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 45058017 ~ 45125710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2561056
TAGAGTATATGGCATAGTTTTACTTTCACATTATTCAGTACAGAGTAAATCTTAAATCTAACACAGGTATCTCACAGGTTTAACACCGATACACAGGGCTGCATTAGCTAGCggatactgcacacacacacacaaaattattCTACAGTTTCCACTACAATGATCAGACTGTCCCACTAATGTTGCATGGGTTAGACATATAAGTGACTCCTGTTGAAACTAATATGACCATGTCTCAAAGATAATTTAGGATATTTTTACCATGTGGTACACCAACACACACTCGTTGCCCACCCCTGATGATTAGATCCTGGTAGTTGTGATTGACAATTGGTCCGagttccctcctccctctcatctctaaGAATGGACATGTTGGTGCGTGTGTCTGAAATGTGAGTTTACAGATAAGTGCTGTCCAGTGTCTTTGTGGTTGGTTGTGTTTTCAAAGATTATAATCAATCTATTTGCAGATTGCTATCTTCTCCCAATTAATACCATAAGGTAAGTATTTGtgacgtgtgtgtgcgcgtgcgtggaCAAGCCTGTGCGTGTTTAGAGATCAAGTTCTGAGGTACTTCTCTTTTTTCAGTCAATCACGGTGTCAAGCAGCACTCTACTCTCCAATCCCATCCCTCTTTTCAGCATGAAAAATTTAAAATAAGGAATACTAGGCCTCTGCTCTGCCGCTTCACTCTTCATGTGAACACGGACTGGCCCACTGCCCTCTAACTCCTTCCAACTACCACCTGAACTCCCATCAATGGGACTTGCTCAATGCTTGCTTATGCACGACAAACATTTCATAAACTGTCGTAAAACAGCCCATGTCAGTTCCCTGCCTCAAGTGTCAAAAAACATTTCTAATCTGAAATAAACAGTTAATTACAATGGTGGTAAGTAGGCTTTATGACAGGTTTAAGTCAAGTGTCAACCTCACCGCTGTCTGATTAACACTGTAAACAAGACCAGCTACCCTGctactctctccctcaatctccttCGAGCTGACCCCTCTACCCTATTCGCAGGGTACACACGGCTAGCCCtactctcgctctcacacacacacgacaaacaCTTCAATAACTCCACTACTAATAAAAGTAAAATGACAAAAAATATAAAGTAAttacattcttaaaaaaaaaatatatatatatatatatatatatatatatatatttcaaaaaaagaatatatatatatatattccatgaACAGGTACATAATCATTTGAGTTTATGTATAAAGTATGGTTACACGCCAGAAAGACAGGGGAAGTGGgagaggggtggtgtgtgtatgtgtttgaggGGTACTGAAGGACTGAGGTCTCTTAGAACCACCTAAAGTGCACTGGCCATTTCCACTGGAATAGAGCTGGAACTGTAGACTTGGGAATGTGCCggagatttttttatggaatattatATCTCAGGGATTATACTGATAGAGGCCCTTGGAATGTATAACCGGTGGGGGACTGGGACAGCAAGGGTGGAGAAGAGATGGGGTTGGGGTGAAGGTGGGGGTTTAGAGTGTCATTTTGGACCCTTACACAGAAGAGTCCCATTTCTTTAGTGATTTCGTTTTACCCCTCCCTCCCACTAAAGGAGGACCCTATACAGATTCTTTACACGGACACTTAAGCATGTACAAATATATGTATCTGCCTACATGTGAGAGTATCTGGGTGTgtattacgtgtgtgtgtgtagaactcCCAGGAATAGTCTAAGGTTGAAATGTCGCGGAATCAACGCACAGATTCTTCCACCCTCCCCCCCATGCATCACACAGGTACCAGCTGTCATCACAAGTACTCAGGGCTTAAACAGACAGGACGGAGAagaacaggacacacacacacacacgcacgcacgggtAAACACCAGAAAAAAACCAAGAATTGTAGTGCcattgataataaacagtaaTAACAATAAGAATCGGAATTATAATCATGACAAAAATAATAAATGACATTCATAATAGGGCAGTCGTGCAAGTGGCAACGGCTGCTTTTTTCCCTTTTGTAGGTATTTTTCTTTCTTCTCATTGATTCTTTGTTCGGGGGGGGGTTGAAACACTGGTCTCTCGGTGTGTTGGGCATCTAGAGCGTAGTGATGATGGCCTGGAGCGCGTTGGGCGAGTTCTAGACTCAGGGTTTCAGAACTGTTCTGCCAGGAGGTCACAGACGCGCTGGGAAACAGTGTCCTTGCTGCTGCGCAGAGTCAGCCGGTACATctgggccTGCGCATTGGGTTCCAGTCTCAGCAGACAGCCGACCTGTTGGGCCTTGGTCTGGATGACTCCAGCACACACATAGTTCTCTGGGTTAGGATCCACATTCTCCAACAGGGCTGTCCCAAGGCCCAGCAActtggCCTTGAGCACTTCTGTGTCCATGCCATGACTGGCCTTGAAGATCTTTTGTGCTTCTTGCTGGGGCTGGCTGAGTTGTTTCCAGCGCTGGAAGAAGTCTGCGGCGGCCATCTCTGTGGGTTGGAAGAACTTGTTGATGGTGACAGGCAGCTTGAGAGAGATATTCTGCAGGGCTCCCCCATACCTGAACTTGATGTTGAGCAGCGGAGCATCAATGAAGTCGGTCAGACACTCGATATTGATGACTTGCTGCACCTGTGCTCCTCCCTCCACTAGGGGTTCCACTGTTTTGGTCTGCACGTTGAGCTGAGACTGCAGCTCCCCTGGACAGCTGACTGTGGTGTTAAAGCTGACAAACTGCACCGAGGTTTTATTGCCATAGAACAGATACATCCTccCCAGGTTCTGGCGGTACTCAGACTTGATGCCGATCTGAAGCAGCTGGTTCTCAAACAACACACCGTTGTTCTTACACACAAatTTGTTGAGAAGCTCATCTGACTCGGGCAGAGGAGGGGCAGGATCCTCAGAGGCCACAGTAGGGGGAGCAGAgCTCAGGAAGCCGTCGTCGTTCACGCCAGCAGAAGTGGCAGAAGGCCCCGCCTCTGAAAACACATCAACCAATAGGCTGCCTGCACTGGGAGTGGCCCCACTAGCAGGAGCGGTCGAACGAAGGCCAAGCAGATCTGCTGAAGGGGAGGGGGTGGAAGCGTTAGAGGCTGCGATGGCAGCGTCGCCCCCCCTGTCCCCTCCACCGTtgagctctcctctctccttgccgTCCTCCAGCTCCACCGACACGGCACCCGgacccttcttcttcttcagctTGGCCAAGATGGATGACTCCCTCTCTGGGAAGGGAGGCATCTCCTCCAGCACAGTGGCCAGGACGTCGGTGCTGGCGATGGAGGAGAGCTTGAGGTACTCCACGGCCCTCTGCTGCAGCTCCACGTCTGAGTTCCTGATCTGGCTGTCGGAGCGAAGCACCTCCTGGATCGTGGCCTTGGTCTCGGGGAACAGGTTGATGAACTTGATGTAGGCGGAGAGCAGCAGGGCGCGCGTGGGCACCGAACACAGGTGGAACTTTGAGTGGAGCAGGTTGAACTGGACcagagggCTAGAGCGGGGATCCCCGGCGATGAGGTTTCCAAACTCTCCCAGGATGTACCCCCCCACCTTCACCATGTTCTCATGACAGGCTGGGGCCTGCAGCgcCTCAAAGACAGTCTTGGCGGCATAGCCCTGCACGTCATCGCGGTTGATGACAATCTGGATGACGCGGTACCACACCTCCTCACTGACGTAGTCCCCGGCAATGCGGATGAGGTTAAGGATGGTGTCAACATACCATGAGTAGTCCACTGCATACTTTTCTGCCAGGATGGCCACCTTCAACACcatCTCCTCTCTGATGGAGTAGTCGGCTGTCTCCAGGTAGCTGAGCATCTCGGCAACTATCTGCTTGGCGTTGCTACGGTCACACATGGCGTAGAGCAGGTCAGCAGCCCTCTGGCGAACACTCACATCCCTTTCAGTCTTGAGTGCGTTGATGACGGTCTCGATGTGCGTCTTGACGGCCTCATGGGAGAACTCCGAGCTGGCCAGGGTACACATGCTTTCCAGAGCCAGGTAGCGCAGATTGGTCTCTCTGTGCTGCAAGAACTGACCTAGCTGGTTACAGGCACGCACCAGCAGGTTGGGCTCaCTGTCGTAGTGGATGATGAGTGAGATAGCCTCGAACAGGATGGCGTTCTTGGCGTTGGAGTGCTGCACCTTTTTGGACTTGGGTGGTTCCTGGGCCTTGTTCAGGATGGTTTCCAGACACTCCACCAGGCGACCCTTCACGGCGCCATCCTCTGGCGGGGGGTAGCACTGCAGCAGGCGCAGCAGTTTACAGGACAGCCATGGGGCCGGGACAAAGTAGTAGGTGTAGTCCTGCAGGTCAGTGGAGGCTGACGACACAATcctgctcagACGAGAAACAGCCAGGGACACACAGGTTTTGAACTCATCTGGGTTCTTCGAGCTGAGACAGGTGATGAGGGAGATGGCTGCCGTGACAACACcCATGTGCTGGTCGTTGAGGAGGTGCACCACCCGGGAGGTCCACTCCCCCATCAGAACCAGGTCTGGGGAGGCCTTGTACAGACGCAGAAGACACAGGGCAGCAGACTGCTTCACACTGTCCATGGTGTCCCCGGCCACCAGAATGCGTGGTATCTCTCCAGCGAAGGCCTCGGCCATCTCACGGCTGCCTACGTTGGCGATGCAGTGCAGGGCCAGGCACATGAAGGTGGGGTTGCGGCTAGACAGGTCGTTCTTGATGGCGTTGTTGATGAGGCGGATCAACTCGCTGTTGCTGTTCACCAGCACCGAGATGAACAGGTAGCCGATCTGTTTCTCTGTGTACTTGTTGGAGCTGAGCAGGTTGACAGCCTCCATGTGTCCAAAGTCGATGTCATGTCCCAGCAGGAAGATGAAGAGCAGCTTGCAGACATACTTCTTCTTACTATAGCCATCCAGTGCCTTATCCCCCTTGAACTTGGAGCGGATGTTGGCCAGCTCCTTATTGATCCGCTTGATCTCTGCCTCCTTGCTCTTACAATTCCGTATGTCCGAAATGAACACCGCTAATCCGCGCATCCCATCTCCCTTCGACACAGCCGGCATTTTTGCTGGTTTCTGTCCTCACTCCGGACTTTcccgtaaaaaaaaaatgaattgtcGATGGTCAGCTATCAAACGTCAGCTGGCGTTTAGGTGTTACAGTGCAGGATGTGTTAGCTTGTTTCctagctagttagccagctaaccAACTTTTAACCGTTAATGTTCCTTGGCGTTTTACCAAAGACAGCAGGTTTATAATGGCTTGCTAGCAATGTAGATTAGCTAGTTTGGATGACAGTGCCGTTGATCAATTCAGCAAACTAGCAGTATGGTTACTCCAAGTGTATCCGTGTTAACTAGCCGACGTTTCCGCTGGCTAGCAAATTCATTCAAACCTTCTCTTCGTTCACGACCAGATGACGGTTAAAGTACACGCAGTTGTAACTAACTACATCTACCCGCTAAATATATTAACGTTATATATCCAGATATCAGAGAAAAAGCACAATGCCAAAAAAATGCCACTCAGTCTGATCTCTGACTGTCAGTGAGTCACGCACGCAAGCTAGCtaaacagctaacgttagctggctagctagctatatcaAATCTTGGAAAACATCACTAGTTGACCGTGATCAGTCAGCATACCATCGTATTTCCACAATGTATCTATTCCAATAATCACGTATGTCCGATGGCTAAACGAAGGCAATTCGATGTCGTCAATAATTTATGTCAATTCACTACTCGGTAGCCTTGGACAAGGCTCGTGACAGCACAAGCAGCGCGACCACGAGACGTGTTCGTT
>TU2561057
TAGAGTATATGGCATAGTTTTACTTTCACATTATTCAGTACAGAGTAAATCTTAAATCTAACACAGGTATCTCACAGGTTTAACACCGATACACAGGGCTGCATTAGCTAGCggatactgcacacacacacacaaaattattCTACAGTTTCCACTACAATGATCAGACTGTCCCACTAATGTTGCATGGGTTAGACATATAAGTGACTCCTGTTGAAACTAATATGACCATGTCTCAAAGATAATTTAGGATATTTTTACCATGTGGTACACCAACACACACTCGTTGCCCACCCCTGATGATTAGATCCTGGTAGTTGTGATTGACAATTGGTCCGagttccctcctccctctcatctctaaGAATGGACATGTTGGTGCGTGTGTCTGAAATGTGAGTTTACAGATAAGTGCTGTCCAGTGTCTTTGTGGTTGGTTGTGTTTTCAAAGATTATAATCAATCTATTTGCAGATTGCTATCTTCTCCCAATTAATACCATAAGGTAAGTATTTGtgacgtgtgtgtgcgcgtgcgtggaCAAGCCTGTGCGTGTTTAGAGATCAAGTTCTGAGGTACTTCTCTTTTTTCAGTCAATCACGGTGTCAAGCAGCACTCTACTCTCCAATCCCATCCCTCTTTTCAGCATGAAAAATTTAAAATAAGGAATACTAGGCCTCTGCTCTGCCGCTTCACTCTTCATGTGAACACGGACTGGCCCACTGCCCTCTAACTCCTTCCAACTACCACCTGAACTCCCATCAATGGGACTTGCTCAATGCTTGCTTATGCACGACAAACATTTCATAAACTGTCGTAAAACAGCCCATGTCAGTTCCCTGCCTCAAGTGTCAAAAAACATTTCTAATCTGAAATAAACAGTTAATTACAATGGTGGTAAGTAGGCTTTATGACAGGTTTAAGTCAAGTGTCAACCTCACCGCTGTCTGATTAACACTGTAAACAAGACCAGCTACCCTGctactctctccctcaatctccttCGAGCTGACCCCTCTACCCTATTCGCAGGGTACACACGGCTAGCCCtactctcgctctcacacacacacgacaaacaCTTCAATAACTCCACTACTAATAAAAGTAAAATGACAAAAAATATAAAGTAAttacattcttaaaaaaaaaatatatatatatatatatatatatatatatatatttcaaaaaaagaatatatatatatatattccatgaACAGGTACATAATCATTTGAGTTTATGTATAAAGTATGGTTACACGCCAGAAAGACAGGGGAAGTGGgagaggggtggtGTCTCTTAGAACCACCTAAAGTGCACTGGCCATTTCCACTGGAATAGAGCTGGAACTGTAGACTTGGGAATGTGCCggagatttttttatggaatattatATCTCAGGGATTATACTGATAGAGGCCCTTGGAATGTATAACCGGTGGGGGACTGGGACAGCAAGGGTGGAGAAGAGATGGGGTTGGGGTGAAGGTGGGGGTTTAGAGTGTCATTTTGGACCCTTACACAGAAGAGTCCCATTTCTTTAGTGATTTCGTTTTACCCCTCCCTCCCACTAAAGGAGGACCCTATACAGATTCTTTACACGGACACTTAAGCATGTACAAATATATGTATCTGCCTACATGTGAGAGTATCTGGGTGTgtattacgtgtgtgtgtgtagaactcCCAGGAATAGTCTAAGGTTGAAATGTCGCGGAATCAACGCACAGATTCTTCCACCCTCCCCCCCATGCATCACACAGGTACCAGCTGTCATCACAAGTACTCAGGGCTTAAACAGACAGGACGGAGAagaacaggacacacacacacacacgcacgcacgggtAAACACCAGAAAAAAACCAAGAATTGTAGTGCcattgataataaacagtaaTAACAATAAGAATCGGAATTATAATCATGACAAAAATAATAAATGACATTCATAATAGGGCAGTCGTGCAAGTGGCAACGGCTGCTTTTTTCCCTTTTGTAGGTATTTTTCTTTCTTCTCATTGATTCTTTGTTCGGGGGGGGGTTGAAACACTGGTCTCTCGGTGTGTTGGGCATCTAGAGCGTAGTGATGATGGCCTGGAGCGCGTTGGGCGAGTTCTAGACTCAGGGTTTCAGAACTGTTCTGCCAGGAGGTCACAGACGCGCTGGGAAACAGTGTCCTTGCTGCTGCGCAGAGTCAGCCGGTACATCTGACAGAGAAGGGACACAGATTTAAcatgtgtaaac
>TU2561058
TAGAGTATATGGCATAGTTTTACTTTCACATTATTCAGTACAGAGTAAATCTTAAATCTAACACAGGTATCTCACAGGTTTAACACCGATACACAGGGCTGCATTAGCTAGCggatactgcacacacacacacaaaattattCTACAGTTTCCACTACAATGATCAGACTGTCCCACTAATGTTGCATGGGTTAGACATATAAGTGACTCCTGTTGAAACTAATATGACCATGTCTCAAAGATAATTTAGGATATTTTTACCATGTGGTACACCAACACACACTCGTTGCCCACCCCTGATGATTAGATCCTGGTAGTTGTGATTGACAATTGGTCCGagttccctcctccctctcatctctaaGAATGGACATGTTGGTGCGTGTGTCTGAAATGTGAGTTTACAGATAAGTGCTGTCCAGTGTCTTTGTGGTTGGTTGTGTTTTCAAAGATTATAATCAATCTATTTGCAGATTGCTATCTTCTCCCAATTAATACCATAAGGTAAGTATTTGtgacgtgtgtgtgcgcgtgcgtggaCAAGCCTGTGCGTGTTTAGAGATCAAGTTCTGAGGTACTTCTCTTTTTTCAGTCAATCACGGTGTCAAGCAGCACTCTACTCTCCAATCCCATCCCTCTTTTCAGCATGAAAAATTTAAAATAAGGAATACTAGGCCTCTGCTCTGCCGCTTCACTCTTCATGTGAACACGGACTGGCCCACTGCCCTCTAACTCCTTCCAACTACCACCTGAACTCCCATCAATGGGACTTGCTCAATGCTTGCTTATGCACGACAAACATTTCATAAACTGTCGTAAAACAGCCCATGTCAGTTCCCTGCCTCAAGTGTCAAAAAACATTTCTAATCTGAAATAAACAGTTAATTACAATGGTGGTAAGTAGGCTTTATGACAGGTTTAAGTCAAGTGTCAACCTCACCGCTGTCTGATTAACACTGTAAACAAGACCAGCTACCCTGctactctctccctcaatctccttCGAGCTGACCCCTCTACCCTATTCGCAGGGTACACACGGCTAGCCCtactctcgctctcacacacacacgacaaacaCTTCAATAACTCCACTACTAATAAAAGTAAAATGACAAAAAATATAAAGTAAttacattcttaaaaaaaaaatatatatatatatatatatatatatatatatatttcaaaaaaagaatatatatatatatattccatgaACAGGTACATAATCATTTGAGTTTATGTATAAAGTATGGTTACACGCCAGAAAGACAGGGGAAGTGGgagaggggtggtGTCTCTTAGAACCACCTAAAGTGCACTGGCCATTTCCACTGGAATAGAGCTGGAACTGTAGACTTGGGAATGTGCCggagatttttttatggaatattatATCTCAGGGATTATACTGATAGAGGCCCTTGGAATGTATAACCGGTGGGGGACTGGGACAGCAAGGGTGGAGAAGAGATGGGGTTGGGGTGAAGGTGGGGGTTTAGAGTGTCATTTTGGACCCTTACACAGAAGAGTCCCATTTCTTTAGTGATTTCGTTTTACCCCTCCCTCCCACTAAAGGAGGACCCTATACAGATTCTTTACACGGACACTTAAGCATGTACAAATATATGTATCTGCCTACATGTGAGAGTATCTGGGTGTgtattacgtgtgtgtgtgtagaactcCCAGGAATAGTCTAAGGTTGAAATGTCGCGGAATCAACGCACAGATTCTTCCACCCTCCCCCCCATGCATCACACAGGTACCAGCTGTCATCACAAGTACTCAGGGCTTAAACAGACAGGACGGAGAagaacaggacacacacacacacacgcacgcacgggtAAACACCAGAAAAAAACCAAGAATTGTAGTGCcattgataataaacagtaaTAACAATAAGAATCGGAATTATAATCATGACAAAAATAATAAATGACATTCATAATAGGGCAGTCGTGCAAGTGGCAACGGCTGCTTTTTTCCCTTTTGTAGGTATTTTTCTTTCTTCTCATTGATTCTTTGTTCGGGGGGGGGTTGAAACACTGGTCTCTCGGTGTGTTGGGCATCTAGAGCGTAGTGATGATGGCCTGGAGCGCGTTGGGCGAGTTCTAGACTCAGGGTTTCAGAACTGTTCTGCCAGGAGGTCACAGACGCGCTGGGAAACAGTGTCCTTGCTGCTGCGCAGAGTCAGCCGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2561056 False 5812 TUCP 0.49 21 45058017 45125710
TU2561057 False 2252 lncRNA 0.42 2 45058017 45060303
TU2561058 True 2211 lncRNA 0.42 2 45058017 45060262

Neighbor

gene id symbol gene type direction distance location
LOC110521014 rcn3 coding upstream 209663 44838387 ~ 44848354 (+)
LOC110521908 LOC106583914 coding upstream 254492 44784210 ~ 44803525 (+)
LOC110521907 LOC106583912 coding upstream 274934 44779950 ~ 44783083 (+)
LOC110521906 NA coding upstream 279140 44776552 ~ 44778877 (+)
LOC110521905 ppp4c coding upstream 289700 44738189 ~ 44768317 (+)
LOC110521916 prmt1 coding downstream 71457 45131760 ~ 45139316 (+)
LOC110521917 LOC106583923 coding downstream 90063 45150366 ~ 45170704 (+)
LOC118945915 NA coding downstream 97227 45157530 ~ 45157608 (+)
LOC110521918 LOC106583924 coding downstream 245211 45305514 ~ 45307830 (+)
LOC110521919 NA coding downstream 297549 45357852 ~ 45365288 (+)
G2240196 NA non-coding upstream 33454 45022323 ~ 45024563 (+)
G2240159 NA non-coding upstream 106123 44950523 ~ 44951894 (+)
G2240156 NA non-coding upstream 111115 44946672 ~ 44946902 (+)
G2240149 NA non-coding upstream 116221 44941543 ~ 44941796 (+)
G2239937 NA non-coding upstream 186359 44869343 ~ 44871658 (+)
G2240268 NA non-coding downstream 82225 45142528 ~ 45142747 (+)
G2240269 NA non-coding downstream 82757 45143060 ~ 45143267 (+)
G2240270 NA non-coding downstream 84337 45144640 ~ 45144902 (+)
G2240272 NA non-coding downstream 86723 45147026 ~ 45147543 (+)
G2240273 NA non-coding downstream 88142 45148445 ~ 45148652 (+)
G2240165 NA other upstream 92480 44964770 ~ 44965537 (+)
G2239933 NA other upstream 197681 44853478 ~ 44860893 (+)
G2239510 NA other upstream 482739 44574856 ~ 44575278 (+)
LOC110521895 LOC103040367 other upstream 494399 44555495 ~ 44563618 (+)
G2239435 LOC106583900 other upstream 630331 44399885 ~ 44427686 (+)
LOC110521020 LOC107658484 other downstream 1100901 46161172 ~ 46190655 (+)

Expression


Co-expression Network