G2240781


Basic Information

Item Value
gene id G2240781
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 45635853 ~ 45637285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2561700
TTCAGACTTTGATTTAATCTTAGATTTCAGCAAATAAATAATGCCTTCATGACAAAATATAATGCAAATAATACCTTTACAATGCAAAAGAGTCCCCTGGACCCCCATATTGGCACAATGAATTAAAGTAGATTTACTGTTCAGACAATAAACTGGTAAGAAATTCAAAAAACATATCAGTTAAATACTGCATCACAGCAAGCAGCCAAGTTAGCTTATTTTCTTCAACATTGTGCATATACAACAACTTCAAATTTGCACTGATAACAATGATAATCGTTGATAATCATAATAATATGATTCAGCAGAAGCGGTAAAATATACAATCATTGCGTGCTATAAGCGTGACAACAATTCAGGTCCTCACCTTTTTCTCAATGTCATTCAACATCAAGTGGAAATACACTTCAAAAATGGCAAAGAACAATATGAAACGCTGGCTTTGTAATTTTACATTTTACTATGGCAACGAGAGTTGAAACATGAAGATACATTAAGCAATGTCATATTTTGCCACTGAATTTTCTGTATATATGAGCCTCAATATTCCACCAAATATGTACATTCAATGTGTGTATGcatctcgctcgctcgctctctctctctctttctcgctctctctctctctctctctctctctctctctctgtgtgtctgtgtgtgtatactgtgtgcaactgagcatgagagagagtgtgtctgctTTCCTGTCTTTCCCTTTTCATTATTTACCTCATAAATATATCTCggcactccctctttctccctctctggctctccctctttatgtctctccctctttatgtCTCTCCTTCCAAATTATCCACCACTTAACCTCTGTAAGGCACCAATCCTAATTTTAGACAAAAAGTTGGACTGTGGAAAACAGCACACCACTGGGAGACAGTCATCGCTGCACACTATGAACAGATGAAGACAAGGGCCTAGATTCAATCTGGGCCATGAAAAATCCACGTTAAAGTGCGATTGACATTTAAAGGAAATTTCTAATTGAAccgacatatgcagcatttaccgtgaatgcCGTCTCCACTAGcgctggaacattgcctttaaaatgtgcTTAGCTGCTTAAACACGATCGGATTGAATctggcccaaggagacgcaaACCTACAATCACTGACAGAAAGAGCGACTGGGAAATTAGAGACACACACAAAAGAAAAGTGAGGTGTAAAGACACAAACtcaaagataaagagagagaatgaaagagagaggcagggaagagGAAATAGCGAGATGGGAGATGAGGGGAGTGAAAGAAGTCATCTGAAAGAAAAAGAAAGTTGTTCCTCTTCCTCCAGATCTCTCTATCTGTGGGTTTTACTTCTTCTCAAGACGTTTCTTCTTCAAATGGACACCTCATACTCCCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2561700 True 1401 lncRNA 0.39 2 45635853 45637285

Neighbor

gene id symbol gene type direction distance location
LOC110521924 mapk8ip3 coding upstream 78418 45480534 ~ 45557435 (+)
LOC110521922 hn1l coding upstream 174287 45447550 ~ 45461566 (+)
LOC110521920 LOC106583926 coding upstream 252973 45368696 ~ 45382880 (+)
LOC110521919 NA coding upstream 270565 45357852 ~ 45365288 (+)
LOC110521918 LOC106583924 coding upstream 328023 45305514 ~ 45307830 (+)
LOC110521928 LOC106583890 coding downstream 207174 45844459 ~ 45862555 (+)
LOC110521931 LOC106600938 coding downstream 290994 45928279 ~ 45933944 (+)
LOC110521932 LOC106583880 coding downstream 297958 45935243 ~ 45980319 (+)
LOC110521019 tr-alpha coding downstream 425598 46062883 ~ 46088097 (+)
LOC110521935 NA coding downstream 502653 46139938 ~ 46146858 (+)
G2240758 NA non-coding upstream 32828 45602462 ~ 45603025 (+)
G2240681 NA non-coding upstream 159763 45475807 ~ 45476090 (+)
G2240680 NA non-coding upstream 160443 45475210 ~ 45475410 (+)
G2240676 NA non-coding upstream 164255 45471292 ~ 45471598 (+)
G2240671 NA non-coding upstream 170484 45465130 ~ 45465369 (+)
G2241145 NA non-coding downstream 148184 45785469 ~ 45785853 (+)
G2241175 NA non-coding downstream 173501 45810786 ~ 45810996 (+)
G2241177 NA non-coding downstream 174274 45811559 ~ 45811966 (+)
G2241186 NA non-coding downstream 180565 45817850 ~ 45818116 (+)
G2241191 NA non-coding downstream 185052 45822337 ~ 45822540 (+)
G2240221 LOC106583920 other upstream 510143 45058017 ~ 45125710 (+)
G2240165 NA other upstream 670316 44964770 ~ 44965537 (+)
G2239933 NA other upstream 775517 44853478 ~ 44860893 (+)
G2239510 NA other upstream 1060575 44574856 ~ 44575278 (+)
LOC110521895 LOC103040367 other upstream 1072235 44555495 ~ 44563618 (+)
LOC110521020 LOC107658484 other downstream 523919 46161172 ~ 46190655 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G338390 pipnb,pitpnbl,LOC103031125,LOC108410611,LOC106600642,LOC105028335,LOC107567088,LOC107552474 non-coding NW_019172936.1 APWO02000145.1 196879 ~ 275971 (+)