G2241375


Basic Information

Item Value
gene id G2241375
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 45981838 ~ 45985885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2562363
ACGTTTCCCGGTCGTAGCAGCGGAACGAGAACGGTGCTAAAATGTCCATAGTGGAAAACCAGAGTATTAAGAGCTCATTTACTCCGTTTCTGAAATAGTCTGCTCAACGCAGCGTGCTTACGGATGGTTGGTTAACGTTTCCCGTCTGATAAATTCTAAACTGCGTTGTTCGTTAAATTCCTAACCAGGAGATACGTACGACTACCACCGGTAGCCAGGTAAACTGGTTGGATTTGACACTTGTATCGGCCCGGGACTGCCATGGAAAAGACACCTACTTTATTCGTCTGCGGCAAGgtgtgagtgttgacgaggacaaggctggagatcactctgtcatgctgattgagtttgaataacagactgaaagcttcaaaaggagggtggtgcttgaaacctttgttcttcctctgtcaactatggttacctgcaaggaaacacatgtcattgctttgcacaaaaagggcttcacaggcaaggataagattgcacctaaatcaaccatttatcggttCATCAAGTACTTCAAGGGGAGAgctgttcaattgttgtgaagaagaagcccaagaaagtccagcaagcgccaggaccgtctcctaaagttgattcagctgcgggatcggggcaccagcagtacagagcttgctcaggaatggcagcaggcaggggtgagtgcatctgcacacacagtgaggcaaatacttttggaggatggcctggtgtcaagaagggcagcaaagaagccacttctctccaggaaaaacatcagggacagactgatattctgcaaaaggtacagggattggactgctgaggactggggtaaagtcattttctctgatgaatccccttggCTTCTCagtcaagggagtgggctcacgcacaattttgcctaagaacacagccatgaataaagaatggtaccaacacatcctccgagagcaacttctcccaaccatccaggaacagtttggtgacgaacaatgccttttcttgcatgatggagcaccttgccataagacaAAACTAAGTGGCTAGAGGAAAAAAacagatattttgggtccatggccaggaaactccacagaccttaatcccattgagaacttgtggtcaatcctcaagaggcgggtggacaaacctTGATTTCCAGCCATGATTGCAAACACAAGCCTCTGCCGAAGTGCTAGTATGCTAGCTGTTCCTATAAACTTCCAATAATTGCgttaatgctaattagcatttcctTGTGAAACTACCTCTTATCCACCAgtttatctgactctggggaaataTATACaaggcttcattgccaaaatccagaactatccctttaaggctgGATTAGTAATAACTCCCAGAGGACTGGCATTGTTTTGAGGGATAGCCAAGGCAGACAGGAAACCCCCACATCCATGTTGTGATGGTACGGAGGACTCCACTCTGCTGAGCCTGTCAGGGAGGGCCATCAGTCATATGAGAAGGTGGCCATGTGAGAAAGTGGCCTGTCTGCCCGGGGAAGACATTAAAAGACTTGTTCAGCCGCTCCACCGCTAGCAGCCCTATGGGAGCTGAGGGCCaattctctacctctctttctcccctgaaGGATACACTTGATCACTCTACTCCTTCATGGAGTTAAATTAGAAGGGCTGGTGAAAGAAGCATGGTGAAAATAAACTCCAATTATCTCATGCTTACACAGATCCAATGCTTTCCAGCTTCTCATGTACAGGGTGAAGACCGAGACAATTGATCCCAAATCGGTTTTGCATGGAGAGAAATTGGAGTGGAAGAAATCTCATGATCGGCTTGCCCTGCTTATATAGATTCAAGCCAGGTCATTAGAGTTAAAGGAGTAGTTCACTATTGATGGGTTTGGATTTCTGAACTTGAAATGTTATTAATCATTAGTTATAATAGAGACCTGATGGGTGCCATAGCCGAGGGGCTACACCAGAgcttaatggttatctgtaggggGAAGGTATATGGTGGGTGCAATTAAGCTTGAAATGTACTGAGTGTAGGGATAGCGATCacatgtggcaggcattgataaggggagagagccGTGGATTAGTGATGAAGGGGGTCAAGGTTAGGTCACGTTAAgggaaaaaaaaagtttattgcCCGTATCACTTAGTTTCCTGCCTAGCAATAAAGATACCATGTTTAGTGAGaaggaggagactccacccaaAGGGTGGTACAAATACCAGCTCTCTAGTAAACATGTTTATGTCTGTTCAGCTGTTTGATCTTTTGGGAAaaataaacttggtttaagctttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2562363 True 2298 lncRNA 0.46 2 45981838 45985885

Neighbor

gene id symbol gene type direction distance location
LOC110521932 LOC106583880 coding upstream 1519 45935243 ~ 45980319 (+)
LOC110521931 LOC106600938 coding upstream 47894 45928279 ~ 45933944 (+)
LOC110521928 LOC106583890 coding upstream 119283 45844459 ~ 45862555 (+)
LOC110521924 mapk8ip3 coding upstream 424403 45480534 ~ 45557435 (+)
LOC110521922 hn1l coding upstream 520272 45447550 ~ 45461566 (+)
LOC110521019 tr-alpha coding downstream 76998 46062883 ~ 46088097 (+)
LOC110521935 NA coding downstream 154053 46139938 ~ 46146858 (+)
LOC118945812 NA coding downstream 167497 46153382 ~ 46157357 (+)
LOC110521020 LOC107658484 coding downstream 175287 46161172 ~ 46190655 (+)
LOC110521021 LOC106600940 coding downstream 200578 46186463 ~ 46214766 (+)
G2241291 NA non-coding upstream 55141 45921519 ~ 45926697 (+)
G2241240 NA non-coding upstream 115795 45865831 ~ 45866043 (+)
G2241224 NA non-coding upstream 121114 45857890 ~ 45860724 (+)
G2241214 NA non-coding upstream 139847 45841603 ~ 45841991 (+)
G2241199 NA non-coding upstream 153460 45828144 ~ 45828378 (+)
G2241380 NA non-coding downstream 3794 45989679 ~ 45989979 (+)
G2241382 NA non-coding downstream 6135 45992020 ~ 45992254 (+)
G2241383 NA non-coding downstream 6818 45992703 ~ 45992976 (+)
G2241387 NA non-coding downstream 11424 45997309 ~ 46005540 (+)
G2241392 NA non-coding downstream 15868 46001753 ~ 46009934 (+)
G2240221 LOC106583920 other upstream 856128 45058017 ~ 45125710 (+)
G2240165 NA other upstream 1016301 44964770 ~ 44965537 (+)
G2239933 NA other upstream 1121502 44853478 ~ 44860893 (+)
G2239510 NA other upstream 1406560 44574856 ~ 44575278 (+)
LOC110521895 LOC103040367 other upstream 1418220 44555495 ~ 44563618 (+)

Expression


Co-expression Network