si:ch211-274f20.2 (LOC106612323)


Basic Information

Item Value
gene id si:ch211-274f20.2
gene name LOC106612323
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 2575623 ~ 2585197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969640.1
TTACACGAACACTTTGAGGAAGTCTGTTTCCCACCGAGCAACCAGTCTCTGAGAACCTCGTCTGACCAGgctACCTACAGACTTGTTCAGGTTCCAGAAGAAGCACATTTTGCAGAGACGTTTGACTCAGATCCTCTAGATAGGAGATGGGTCCAATCCAAGGCTGTGAAAGAGACAGATGCTGAGGCTCTCAAATACGATGGCCAATGGGTGGTGGAAGAGCCAGCGGCTGCAATGTATCCTGGGAATAGAGCACTGGTGATGAAGTCATCAGGACGACACCATGCCATCGCTGCCTACCTACACACACCCTTCAACTTCATGCACACACCTCTCTGCCTGCAgtatgAGGTGAGGTTCGGGAGAGATGTAGAGTGCAGTGGAGCCTACATCAAACTGCTGACTCAGACCCATCTGCTACGACTGAGCCAGTTCAGTGAGTCCACTCCGTACTCTGTGATGTTTGGTCCTGATAAGTGCGGCACCAGCCACCGCCTCCATCTCATCGTCAGGGTAACGGACTCTAGCAACGGCCGTAACCAAGAGATACACGCCCCCCAACCCGTCGATGACCTGACGGTGTACTTCACCGACCGACAACCACACCTCTATACACTACaATTGTATCAAGACAGCAGGTATGAGATTTTCATTGACCAATCGCTGATCAGTCAAGGCCGCCTGCTGACAGACGAAGTCCAGTACACAGAATCCCCTGACAGCCAACCAGAGTCCCCGGTGTCTGGATTAGGGGTGGGGTCAGTCGCGGCGCTGGGTCTGGAACTGTGGTCATTGTCGGGGGAAGTTATGTTTGACAATTTCCTGTTGACTGATGAcctgaagctggctgagagatgGACACAGGATACCTGGGGACGGAAAcaaCCCGGCCTGTTGGAGAGACTACTGATAGCAACTAACTCTCGTCCCTGGCTCTGGGGTGTCTACATCTTCACGGTGGGATTACCCATCATCCTCTTCATCAGCTACATGTGGCCGGACAAGAGATTCGGGCCCCCTGACCAGGACTACTACTATAAGAAGTTTGATGAACCTCAGCCAGacagacaaccagagagagaccagccagaCAGACCAACCAGCCTCTCAGACTATGgtgcggTGAGCAGAGAGGGGGCCAGGAGGAGAGAAACTCAGAAGGTTCAGAGGAAGTCAGACCTGGAGGTTGAGAATGAGTGAAAATCCCTGGCCAGCCTGAGGACTAACCAACCCTAACCAGCCTGAGGACTAACTAGAGCTGTGGCGGTCACGGAATTTCGtcagccagtgattgtcaa
>TU2565459
CTTTGAGGAAGTCTGTTTCCCACCGAGCAACCAGTCTCTGAGAACCTCGTCTGACCAGACATGATGTTCGGCCGCCTGCtgcttgcctgtgtgtgtttaaccCCGGCGGATCCAGTTCAGgctACCTACAGACTTGTTCAGGTTCCAGAAGAAGCACATTTTGCAGAGACGTTTGACTCAGATCCTCTAGATAGGAGATGGGTCCAATCCAAGGCTGTGAAAGAGACAGATGCTGAGGCTCTCAAATACGATGGTCAGCAGGCAGTAGAGTATCCAGAGGTTAGCGTTAGAGCCAGGGGTTAAAGGTGTGTTTCCTCCAGGCCAATGGGTGGTGGAAGAGCCAGCGGCTGCAATGTATCCTGGGAATAGAGCACTGGTGATGAAGTCATCAGGACGACACCATGCCATCGCTGCCTACCTACACACACCCTTCAACTTCATGCACACACCTCTCTGCCTGCAgtatgAGGTGAGGTTCGGGAGAGATGTAGAGTGCAGTGGAGCCTACATCAAACTGCTGACTCAGACCCATCTGCTACGACTGAGCCAGTTCAGTGAGTCCACTCCGTACTCTGTGATGTTTGGTCCTGATAAGTGCGGCACCAGCCACCGCCTCCATCTCATCGTCAGGGTAACGGACTCTAGCAACGGCCGTAACCAAGAGATACACGCCCCCCAACCCGTCGATGACCTGACGGTGTACTTCACCGACCGACAACCACACCTCTATACACTACGTTAGTATGCAGCCTAACCACTAAACCCTACCTCTACACACTACGTTAGTATGCAGCCTAACCACTAAATACTACACAGTAAACCTCACATCTGTGTGTGAAACACATGGCTTTCCTATAGAAAGTTCCATTCAGGATTGCTGCCACTCTACTCCATTTCCCTGGATCTCCGGGGGAGACAAACATGGTTTTCTCCTGGAGCAGTTTAGTGTCTAGGATTTTTCTCATGAGTCTGCAATTGTTTCCATTCATGTTGCGACAGTCGATGTTCATACCCAGAGAAATGACTCTCACATGACTGGCTTGCTGACCTGATAGCCAGCAAGGTGAGAAAAGTGGTCTCACCAACAGCACACATGCATGAACATTTTTGTGTAAAGGGAAGCTGGTGTGATGTTTATGATGTGTTTTTCCAGATATTGTTGTTGTGGGGGGAGGCCAGGGGGAGGTGCTCATTTTGGAAGTGGGCTGCTCATTGGATGGCTACATGGAAAAGGCCTTGGCAGAGAATCTGCTTAAATACCAACCCCTCATGGCACTCTGGGACAGCCTCGGGTGGAGGTGCAGGCAGGCTGGAACAGCCTCGGTGGAGGTGCAAGCTGGAGGTGATGATATGTGGCAGTCTCTGCCACGCTCACAGGCTTGCAGTGTGTGGCCACCAGACTGTGGGCCTGACAACAACTAGGGCAAAGCAGTTGGCtgggtactgctctgtttcagctgccGTGGGTATCCTAGCTGCTTGGAGAAGGAGGTGCTCTCTGGACCCTTGAGGGACATGCAGACAGAGACCTTTGATTGGTGGAGTCAAATAAAGtatttaacgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgcagaATTGTATCAAGACAGCAGGTATGAGATTTTCATTGACCAATCGCTGATCAGTCAAGGCCGCCTGCTGACAGACGAAGTCCAGTACACAGAATCCCCTGACAGCCAACCAGAGTCCCCGGTGTCTGGATTAGGGGTGGGGTCAGTCGCGGCGCTGGGTCTGGAACTGTGGTCATTGTCGGGGGAAGTTATGTTTGACAATTTCCTGTTGACTGATGAcctgaagctggctgagagatgGACACAGGATACCTGGGGACGGAAAcaaCCCGGCCTGTTGGAGAGACTACTGATAGCAACTAACTCTCGTCCCTGGCTCTGGGGTGTCTACATCTTCACGGTGGGATTACCCATCATCCTCTTCATCAGCTACATGTGGCCGGACAAGAGATTCGGGCCCCCTGACCAGGACTACTACTATAAGAAGTTTGATGAACCTCAGCCAGacagacaaccagagagagaccagccagaCAGACCAACCAGCCTCTCAGACTATGgtgcggTGAGCAGAGAGGGGGCCAGGAGGAGAGAAACTCAGAAGGTTCAGAGGAAGTCAGACCTGGAGGTTGAGAATGAGTGAAAATCCCTGGCCAGCCTGAGGACTAACCAACCCTAACCAGCCTGAGGACTAACTAGAGCTGTGGCGGTCACGGAATTTCGtcagccagtgattgtcaagcaaataactgtggGTCTCACGGTTATTACCGCTGACACAGACCTTTGGAACGTCTACATTTTAAAATgtctaataaatccatataatacagcctacaccacaataaatccatataatacagcctacaccacaataaatccatataatacagcctacaccacaataaatccatataatacagcctacaccacaataaatccatataatacagcctacaccacaataaatccatataatgcAGCCTACACCACAATAATCCATATAATACAGCCTacaccacaataaatccatataatacagcctacaccacaataaatccatataatacagcctacaccacaataaatccatataatacagcctacaccacaataaatccatataatatagcctacaccacaataaatccatataatacagcctacaccacaataaatccatataatatagcctacaccacaataaatccatataatacagcctacaccacaataaatccatataatacagcctacaccacaataaatccatataatacagcctacaccacaataaatccatataatatagcctacaccacaataaatccatataatacagcctacaccacaataaatccatataatatagcctacaccacaataaatccattatttattttagacaggtctaaagaagcataatataagaaaatgtagtctatttcagaagaacagaataacatactctgtgttgtcctcatgttaggccctgatctggctgtgccatatggctgtgggctacactagttcattcaGCAGACAAGATTTTCTTGGAATTCCATTGCATTATTTTATAATatgttatagtatgaagaatacagttgaacaaagctgaataaaatagaaaggatatgttCTCCAAACAGTTTGATGGAGTGCAACTATTCTGTGTTgagaggttaacaaagaaataggtcctCCTAGATGCTACATTTAGAGacattaatgtaactttagttgttctacaaacgttggccTGTATGTTTtgatttaatacattgtaaggctgcatgatgagactctaatgatgatttgaaacaAGTTGCTTGAAAGGCAGGAGCTCTGCTTTGTATTTTGAGAAGGCTGTACACCAGGGGTTCTTAAGCCTgagacccaaatgagaaattctaTGTTTTCCTGGGACACAAGCTTAGGAAAATGTGCAACTATACGTAAATATCGGAACATTTCATTGCCCTTATGCCTAAAAAAATGCAATAAAATACCC

Function

NR:

description
calnexin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969640.1 False 1298 mRNA 0.53 11 2576893 2585197
TU2565459 True 3545 TUCP 0.46 11 2575623 2585186

Neighbor

gene id symbol gene type direction distance location
lpar4 LOC106612318 coding downstream 206298 2361115 ~ 2370595 (-)
tbx22 LOC106590980 coding downstream 410990 2143315 ~ 2165903 (-)
sh3bgrl LOC106612317 coding downstream 486453 2034918 ~ 2090440 (-)
LOC118946053 NA coding downstream 733179 1843361 ~ 1843714 (-)
LOC110504477 LOC106591805 coding downstream 742411 1816617 ~ 1834482 (-)
LOC110504350 LOC106612322 coding upstream 2701 2587898 ~ 2621172 (-)
LOC110504452 LOC106592046 coding upstream 128191 2713388 ~ 2741674 (-)
LOC118945987 NA coding upstream 968993 3554190 ~ 3556559 (-)
LOC118946073 NA coding upstream 1382437 3967634 ~ 3968806 (-)
LOC110489654 LOC104930052 coding upstream 1383719 3968916 ~ 4058166 (-)
G2243516 NA non-coding downstream 33585 2530857 ~ 2543308 (-)
G2243509 NA non-coding downstream 34476 2504922 ~ 2542417 (-)
G2243510 NA non-coding downstream 49455 2508179 ~ 2527438 (-)
G2243512 NA non-coding downstream 51141 2520279 ~ 2525752 (-)
G2243511 NA non-coding downstream 55953 2517218 ~ 2520940 (-)
G2243584 NA non-coding upstream 21988 2607185 ~ 2608617 (-)
G2243594 NA non-coding upstream 38364 2623561 ~ 2623838 (-)
G2243596 NA non-coding upstream 40985 2626182 ~ 2626389 (-)
G2243598 NA non-coding upstream 41300 2626497 ~ 2626871 (-)
G2242632 NA other downstream 1183178 1390378 ~ 1393715 (-)
G2242341 LOC106604099 other downstream 1617231 936604 ~ 959662 (-)
LOC110504451 LOC106611915 other downstream 1866213 708100 ~ 710842 (-)
G2242265 NA other downstream 1965827 609651 ~ 611066 (-)
LOC118945985 LOC106612342 other downstream 2313879 262441 ~ 265301 (-)
G2243777 NA other upstream 300094 2885291 ~ 2887459 (-)
G2243801 NA other upstream 351511 2936604 ~ 2937542 (-)
higd2a LOC106612309 other upstream 1513570 4098767 ~ 4100716 (-)
G2244811 NA other upstream 1526505 4111702 ~ 4113001 (-)
G2245152 ctnna1 other upstream 1950644 4535841 ~ 4621990 (-)

Expression


Co-expression Network