higd2a (LOC106612309)


Basic Information

Item Value
gene id higd2a
gene name LOC106612309
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 4098767 ~ 4100716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583228.2
TTTACGGAAGCTCTCGAATGAGGTCATCTATCACATTTTCAACATCTTTGTTCGGAACCATTCATCCGCTCCCAGTGTAGCTGGTATCCGTAACTTCGGGAACAGACACTCTGCAAACATGGCTTCTGCCACTACCCCGGTTGTCCCTGAACAGTCAGCGACAACCACACATTTACCAATGCTCGACATATCCAAGCCCCCCGTTATAGAAGGATTTACACCTCTATCTCGACCCAGAGAAGAGACGTTTCAGGAGAAGTTTATGAGGAAGTCGAAGGAGAACCCGTTCGTCCCTATAGGTTGTCTCGGTACAGCTGGAGCGTTGATGTACGGTCTCCGAGCCTTCAAACAAGGCAAGACCCGGCAGTCCCAGCTCCTGATGAGAGGACGTATCTTCGCACAAGGCTTCACTGTAGTGGCTATCATCTTCGGCGTGTTCACCACGGCACTGAAGAAAGACTGAGCAGCATTAGGGTTGTATTCATTACtgcaaaaacgtttttttttgcaacggggaaaaaaactaaaacaaggGGTTTCTTATtagacaagttcaggtagtccctccttgTTTCAGACTGTTTTCTAGCGTTCGGCGActagtgaatacgacccaggCCTTTTGGAACCTCCCGCCAGTCTATCCTCTCCTTTGAGCCTTGGAGAAAAGTGTGGTGGGAATGAAATGTTGTTTGAATACATAGAAAGACTAACATAACAGATATTTAAAAAGGGCCAATCAACTGtttttttcctctcttctctcgctctcccttttcTGGACTTCCTTAACTGCTTTGGGCTGATCCAGTCAAATGAAATGTACACCCTGTTCTGCAGATGGCAAAGCAAGCAGGGCACAGACTGCCTTGAGTTAAAAACCTAATTGTGTAACTATATCCAATGCAATGCAGCCATCCACATATGTAGACACACAGCTGACCCACTACCACTTGCTATCGGTTAGAGATCCACCTCTGTAATACAGAGAATTATAACAAGACTCAGAACCACATTTTTTTTAGCACCATGTATTGTCAGTTCCACTAGCCATGTATTAGCCATATCAAGTAAAACAGAGTCCTGTTCcttcaataaaaatgtaaaaattaa
>TU2566928
TCTTTGTTCGGAACCATTCATCCGCTCCCAGTGTAGCTGGTATCCGTAACTTCGGGAACAGACACTCTGCAAACATGGCTTCTGCCACTACCCCGGTTGTCCCTGAACAGTCAGCGACAACCACACATTTACCAATGCTCGACATATCCAAGCCCCCCGTTATAGAAGGATTTACACCTCTATCTCGACCCAGAGAAGAGACGTTTCAGGAGAAGTTTATGAGGAAGTCGAAGGAGAACCCGTTCGTCCCTATAGGTTGTCTCGGTACAGCTGGAGCGTTGATGTACGGTCTCCGAGCCTTCAAACAAGGCAAGACCCGGCAGTCCCAGCTCCTGATGAGAGGACGTATCTTCGCACAAGGCTTCACTGTAGTGGCTATCATCTTCGGCGTGTTCACCACGGCACTGAAGAAAGACTGAGCAGCATTAGGGTTGTATTCATTACtgcaaaaacgtttttttttgcaacggggaaaaaaactaaaacaaggGGTTTCTTATtagacaagttcaggtagtccctccttgTTTCAGACTGTTTTCTAGCGTTCGGCGActagtgaatacgacccaggCCTTTTGGAACCTCCCGCCAGTCTATCCTCTCCTTTGAGCCTTGGAGAAAAGTGTGGTGGGAATGAAATGTTGTTTGAATACATAGAAAGACTAACATAACAGATATTTAAAAAGGGCCAATCAACTGtttttttcctctcttctctcgctctcccttttcTGGACTTCCTTAACTGCTTTGGGCTGATCCAGTCAAATGAAATGTACACCCTGTTCTGCAGATGGCAAAGCAAGCAGGGCACAGACTGCCTTGAGTTAAAAACCTAATTGTGTAACTATATCCAATGCAATGCAGCCATCCACATATGTAGACACACAGCTGACCCACTACCACTTGCTATCGGTTAGAGATCCACCTCTGTAATACAGAGAATTATAACAAGACTCAGAACCACATTTTTTTTAGCACCATGTATTGTCAGTTCCACTAGCCATGTATTAGCCATATCAAGTAAAACAGAGTCCTGTTCcttcaataaaaatgtaaaaattaa

Function

NR:

description
HIG1 domain family member 2A-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583228.2 False 1113 mRNA 0.45 2 4098767 4100716
TU2566928 True 1069 TUCP 0.45 2 4098767 4100672

Neighbor

gene id symbol gene type direction distance location
LOC110489654 LOC104930052 coding downstream 40601 3968916 ~ 4058166 (-)
LOC118946073 NA coding downstream 129961 3967634 ~ 3968806 (-)
LOC118945987 NA coding downstream 542208 3554190 ~ 3556559 (-)
LOC110504452 LOC106592046 coding downstream 1357093 2713388 ~ 2741674 (-)
LOC110504350 LOC106612322 coding downstream 1477595 2587898 ~ 2621172 (-)
LOC110504518 LOC106612310 coding upstream 29938 4130654 ~ 4199943 (-)
LOC110513918 syub coding upstream 135453 4236169 ~ 4290491 (-)
LOC110504469 LOC106612313 coding upstream 488717 4589433 ~ 4594305 (-)
LOC118945992 NA coding upstream 686723 4787439 ~ 4788320 (-)
LOC110504358 LOC106604155 coding upstream 1388013 5488729 ~ 5526792 (-)
G2244814 NA non-coding downstream 22214 4076112 ~ 4076553 (-)
G2244809 NA non-coding downstream 26114 4072303 ~ 4072653 (-)
G2244779 NA non-coding downstream 113804 3981041 ~ 3984963 (-)
G2244770 NA non-coding downstream 119957 3935023 ~ 3978810 (-)
G2244732 NA non-coding downstream 131579 3964668 ~ 3967188 (-)
G2244826 LOC106612308 non-coding upstream 4927 4105643 ~ 4110239 (-)
G2244812 NA non-coding upstream 10728 4111444 ~ 4117193 (-)
G2244828 NA non-coding upstream 19666 4120382 ~ 4136225 (-)
G2244841 NA non-coding upstream 52738 4153454 ~ 4176483 (-)
G2244850 NA non-coding upstream 75816 4176532 ~ 4177446 (-)
G2243801 NA other downstream 1161225 2936604 ~ 2937542 (-)
G2243777 NA other downstream 1211308 2885291 ~ 2887459 (-)
si:ch211-274f20.2 LOC106612323 other downstream 1513581 2575623 ~ 2585197 (-)
G2242632 NA other downstream 2705052 1390378 ~ 1393715 (-)
G2242341 LOC106604099 other downstream 3139105 936604 ~ 959662 (-)
G2244811 NA other upstream 10986 4111702 ~ 4113001 (-)
G2245152 ctnna1 other upstream 435125 4535841 ~ 4621990 (-)
G2246314 NA other upstream 1747403 5848119 ~ 5852599 (-)
G2247416 NA other upstream 2769871 6870587 ~ 6871100 (-)
G2247565 NA other upstream 2837907 6938623 ~ 7024539 (-)

Expression


Co-expression Network