LOC110513918 (syub)


Basic Information

Item Value
gene id LOC110513918
gene name syub
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 4236169 ~ 4290491 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970239.1
AGCTCCAGGACCAGGGTCGAGATGGATGTGTTCATGAAAGGGTTGTCCAAAGCTAAAGACGGCATGGCTATCGCCGCGGAGAAGACTAAGGAGGGAGCTGCGCTGGCGGCGGAAAAGACCAAGGAAGGAGCCATGTTTATCGGCACCAAGGCCAAAGATGGTGTTGGTTCAGCGAAGGACCTTGCTGGTGGAGCCATGGGGAATATCGCTGCAGCCACCGGCCTGGGGAAGAAGGACGAGTTCCCATCTGACATGAACCCTGAGGAGTATGGGcaggaggccatggaaggagagacaCAAAGAGATCATCTGGAAGGAGAGACATATGACGAGAACCAGCAGgagcaggagcaggacTACGAACAAGAGGCATAAATCCACCAGTCCAGTTCTCCATCCAACCAGCAGCACAATACCGACATGTATTCAAACAAAAAGAACAGATGCTGAAACTACGACAACAAAACAAATCTAATCccgttgcaaaaaaaaaaaaatgtacaaaatcCACAAACAAGAATTCCACCTGAGACAAaacattcctcctcctcttcaagaCGAATCTTTTCTGATAATCGATGCTATATTGTAAATGTCATGTTACCGCTGTAATGTGTTGGGTCGTGTAGTTGTTTCTTGAGGTGTAGAAGAGCCGCCCGCTGTCTCGAGTCTCGTTTCCTTGATTCCCTCCCAATGGAAACGAGACCCCCGGACCAGGCCTATATGGCTTGTGACCATAGAAATACGATCCATAGAACAGGCCTCCCCATTCAAGACTGGACTCTATTTCTATGCGTGTGACTCTTTGTGTGTTTTCTGTATTTATAAATGTGAGATAATAATAGGTGTATTTTTCTCATCTTCCAACAACAACGTTGGGGGCGTTAGAAAATAATTAATCCGATTGCAGATATAGATATGACTACTACCAATAACATTCTATAAGTGTGTACAATGTCTGTTTGTGGGTTCTCTCTTTTGGATTTACTTTTGGAGCACGTTTATATTAATTTAATGTATTTTTAAGTCAGAGTTTTATACATTGTATCTTTATAGTTGCTTGTGAAATCATTCTTGGTGGAACTATCTGTTAGAAATGGATaaactacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgaagaTTTTAACAAGTTAAAGTCAATATATTATGTCTTGAAATCATAATGGTTGTCAGATCAATATGTGCTTTAAAGTGCAGGACTTGTCAATATAAAGGTTTATGTGTCAATGCAGACAAACTAACACACCTTCTGTAAATAAAAACGTCAGAAAAAAGAAACTAA
>XM_036970241.1
AGCTCCAGGACCAGGGTCGAGATGGATGTGTTCATGAAAGGGTTGTCCAAAGCTAAAGACGGCATGGCTATCGCCGCGGAGAAGACTAAGGAGGGAGCTGCGCTGGCGGCGGAAAAGACCAAGGAAGGAGCCATGTTTATCGGCACCAAGGCCAAAGATGGTGTTGGTTCAGCGAAGGACCTTGCTGGTGGAGCCATGGGGAATATCGCTGCAGCCACCGGCCTGGGGAAGAAGGACGAGTTCCCATCTGACATGAACCCTGAGGAGTATGGGcaggaggccatggaaggagagacaCAAAGAGATCATCTGGAAGGAGAGACATATGACGAGAACCAGCAGcaggagcaggacTACGAACAAGAGGCATAAATCCACCAGTCCAGTTCTCCATCCAACCAGCAGCACAATACCGACATGTATTCAAACAAAAAGAACAGATGCTGAAACTACGACAACAAAACAAATCTAATCccgttgcaaaaaaaaaaaaatgtacaaaatcCACAAACAAGAATTCCACCTGAGACAAaacattcctcctcctcttcaagaCGAATCTTTTCTGATAATCGATGCTATATTGTAAATGTCATGTTACCGCTGTAATGTGTTGGGTCGTGTAGTTGTTTCTTGAGGTGTAGAAGAGCCGCCCGCTGTCTCGAGTCTCGTTTCCTTGATTCCCTCCCAATGGAAACGAGACCCCCGGACCAGGCCTATATGGCTTGTGACCATAGAAATACGATCCATAGAACAGGCCTCCCCATTCAAGACTGGACTCTATTTCTATGCGTGTGACTCTTTGTGTGTTTTCTGTATTTATAAATGTGAGATAATAATAGGTGTATTTTTCTCATCTTCCAACAACAACGTTGGGGGCGTTAGAAAATAATTAATCCGATTGCAGATATAGATATGACTACTACCAATAACATTCTATAAGTGTGTACAATGTCTGTTTGTGGGTTCTCTCTTTTGGATTTACTTTTGGAGCACGTTTATATTAATTTAATGTATTTTTAAGTCAGAGTTTTATACATTGTATCTTTATAGTTGCTTGTGAAATCATTCTTGGTGGAACTATCTGTTAGAAATGGATaaactacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgaagaTTTTAACAAGTTAAAGTCAATATATTATGTCTTGAAATCATAATGGTTGTCAGATCAATATGTGCTTTAAAGTGCAGGACTTGTCAATATAAAGGTTTATGTGTCAATGCAGACAAACTAACACACCTTCTGTAAATAAAAACGTCAGAAAAAAGAAACTAA
>XM_036970242.1
AGCTCCAGGACCAGGGTCGAGATGGATGTGTTCATGAAAGGGTTGTCCAAAGCTAAAGACGGCATGGCTATCGCCGCGGAGAAGACTAAGGAGGGAGCTGCGCTGGCGGCGGAAAAGACCAAGGAAGGAGCCATGTTTATCGGCACCAAGGCCAAAGATGGTGTTGGTTCAGCGAAGGACCTTGCTGGTGGAGCCATGGGGAATATCGCTGCAGCCACCGGCCTGGGGAAGAAGGACGAGTTCCCATCTGACATGAACCCTGAGGAGTATGGGcaggaggccatggaaggagagacaCAAAGAGATCATCTGGAAGGAGAGACATATGACGAGAACCAGCAGgagcaggacTACGAACAAGAGGCATAAATCCACCAGTCCAGTTCTCCATCCAACCAGCAGCACAATACCGACATGTATTCAAACAAAAAGAACAGATGCTGAAACTACGACAACAAAACAAATCTAATCccgttgcaaaaaaaaaaaaatgtacaaaatcCACAAACAAGAATTCCACCTGAGACAAaacattcctcctcctcttcaagaCGAATCTTTTCTGATAATCGATGCTATATTGTAAATGTCATGTTACCGCTGTAATGTGTTGGGTCGTGTAGTTGTTTCTTGAGGTGTAGAAGAGCCGCCCGCTGTCTCGAGTCTCGTTTCCTTGATTCCCTCCCAATGGAAACGAGACCCCCGGACCAGGCCTATATGGCTTGTGACCATAGAAATACGATCCATAGAACAGGCCTCCCCATTCAAGACTGGACTCTATTTCTATGCGTGTGACTCTTTGTGTGTTTTCTGTATTTATAAATGTGAGATAATAATAGGTGTATTTTTCTCATCTTCCAACAACAACGTTGGGGGCGTTAGAAAATAATTAATCCGATTGCAGATATAGATATGACTACTACCAATAACATTCTATAAGTGTGTACAATGTCTGTTTGTGGGTTCTCTCTTTTGGATTTACTTTTGGAGCACGTTTATATTAATTTAATGTATTTTTAAGTCAGAGTTTTATACATTGTATCTTTATAGTTGCTTGTGAAATCATTCTTGGTGGAACTATCTGTTAGAAATGGATaaactacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgaagaTTTTAACAAGTTAAAGTCAATATATTATGTCTTGAAATCATAATGGTTGTCAGATCAATATGTGCTTTAAAGTGCAGGACTTGTCAATATAAAGGTTTATGTGTCAATGCAGACAAACTAACACACCTTCTGTAAATAAAAACGTCAGAAAAAAGAAACTAA
>XM_036970240.1
CAGCATCATTACATAGTGTACATAGTGTAGCCTATGGCAATGGACTGGGAAGGGGGAAATGGCGGAGATACAGGCTTTATAAGTCCTCCACAATGGTGGTAGTGAACAAGAGACTAAAATTTAGCAGAAAATAGGGTAGGTCTAGACGGTGAGCTCTCTTGAATTAAAGCTAAGCTTATTTTGCCATTATGCCCGTCAGTCCGAGCATCCAGGACACGTAGCTGTTAACTGTTAGACAGAAAGCCTAGCTGGTGCTGTTGGAATGATCAATGAAAAGGGGGCTACGTGGTCGGCCGCTCCCTATTGGtcgacagacagagtatcccgagGAAAACCCTCCTACCCAGCGATCAGTCTGTGATAGCAGCTCCCGTTCAGGCGATATTTGAATCAGCTGGGCAGTGGAACCTTGAGGAAACAAGTCATATTTGTAAAAAGAGCTCCAGGACCAGGGTCGAGATGGATGTGTTCATGAAAGGGTTGTCCAAAGCTAAAGACGGCATGGCTATCGCCGCGGAGAAGACTAAGGAGGGAGCTGCGCTGGCGGCGGAAAAGACCAAGGAAGGAGCCATGTTTATCGGCACCAAGGCCAAAGATGGTGTTGGTTCAGCGAAGGACCTTGCTGGTGGAGCCATGGGGAATATCGCTGCAGCCACCGGCCTGGGGAAGAAGGACGAGTTCCCATCTGACATGAACCCTGAGGAGTATGGGcaggaggccatggaaggagagacaCAAAGAGATCATCTGGAAGGAGAGACATATGACGAGAACCAGCAGgagcaggagcaggacTACGAACAAGAGGCATAAATCCACCAGTCCAGTTCTCCATCCAACCAGCAGCACAATACCGACATGTATTCAAACAAAAAGAACAGATGCTGAAACTACGACAACAAAACAAATCTAATCccgttgc

Function

NR:

description
Beta-synuclein

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970239.1 False 1363 mRNA 0.42 5 4236169 4287197
XM_036970241.1 False 1360 mRNA 0.42 5 4236169 4287197
XM_036970242.1 False 1357 mRNA 0.42 5 4236169 4287197
XM_036970240.1 True 922 mRNA 0.50 6 4237048 4290491

Neighbor

gene id symbol gene type direction distance location
LOC110504518 LOC106612310 coding downstream 36226 4130654 ~ 4199943 (-)
higd2a LOC106612309 coding downstream 135453 4098767 ~ 4100716 (-)
LOC110489654 LOC104930052 coding downstream 178003 3968916 ~ 4058166 (-)
LOC118946073 NA coding downstream 267363 3967634 ~ 3968806 (-)
LOC118945987 NA coding downstream 679610 3554190 ~ 3556559 (-)
LOC110504469 LOC106612313 coding upstream 298942 4589433 ~ 4594305 (-)
LOC118945992 NA coding upstream 496948 4787439 ~ 4788320 (-)
LOC110504358 LOC106604155 coding upstream 1198238 5488729 ~ 5526792 (-)
LOC110504491 LOC106604157 coding upstream 1242368 5532859 ~ 5604780 (-)
LOC110504359 LOC106612272 coding upstream 1416927 5707418 ~ 5731006 (-)
G2244878 NA non-coding downstream 840 4233445 ~ 4235329 (-)
G2244877 NA non-coding downstream 4418 4231517 ~ 4231751 (-)
G2244875 NA non-coding downstream 6871 4229089 ~ 4229298 (-)
G2244867 NA non-coding downstream 33787 4202176 ~ 4202382 (-)
G2244864 NA non-coding downstream 40661 4194544 ~ 4195508 (-)
G2244902 NA non-coding upstream 1358 4291849 ~ 4292057 (-)
G2244903 NA non-coding upstream 1725 4292216 ~ 4292431 (-)
G2244913 NA non-coding upstream 11129 4301620 ~ 4302104 (-)
G2244936 NA non-coding upstream 28079 4318570 ~ 4318900 (-)
G2244937 NA non-coding upstream 29406 4319897 ~ 4320211 (-)
G2244811 NA other downstream 123168 4111702 ~ 4113001 (-)
G2243801 NA other downstream 1298627 2936604 ~ 2937542 (-)
G2243777 NA other downstream 1348710 2885291 ~ 2887459 (-)
si:ch211-274f20.2 LOC106612323 other downstream 1650983 2575623 ~ 2585197 (-)
G2245152 ctnna1 other upstream 245350 4535841 ~ 4621990 (-)
G2246314 NA other upstream 1557628 5848119 ~ 5852599 (-)
G2247416 NA other upstream 2580096 6870587 ~ 6871100 (-)
G2247565 NA other upstream 2648132 6938623 ~ 7024539 (-)
G2247813 NA other upstream 2964853 7255344 ~ 7255940 (-)

Expression


Co-expression Network