LOC110504469 (LOC106612313)


Basic Information

Item Value
gene id LOC110504469
gene name LOC106612313
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 4589433 ~ 4594305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583225.2
agagagagagagagagagagagagaaagagagagagagagagagaaacagcactGATGTTCGACGCCAGGCTGCCACCACTCTGTAGTGGTGAGTGGCTGCAACAAAAGCTCAGAATAACATCCCTGGCTTTCCGCTCGTCTTTTCTCTCTGCGTCGTTAGCTGGCTGCTCGGGACGCCCAGCGCCCGTAGGAGGAGAGTTGCTCCCTCCAACATACTGATCGCTGCAGTAGGCTGTGCTGGTCACCACAGACCGACCAACCCAACGGCTCTCTGCCTGCCGGGTATCCCTGCCATCAACAAGTTAGGGGCAGGACGACTAAGGGATGGAgaggaccccccccccaccacctctcaGCCAAGAGGGGCACTATTTGATACTCAATTAACCAATTGAGCTGACATCATTGCAGTgtggaaggaggagggaaggaataCGAGGAAACAGTGTTTAAGAGCCAGGGAGCTTTGGCAGCAAATCAACTAAAAACGAAGAtaccaaaaaaaacaaaacaaaaaacagccCTTTGGATAATGTGTGATTAAAAAACGCCAGAGGGGAAGATCACAACTAGGACCCGACAACATAATCAACCAGGGACATGGGATTTGTGATTTCGTTTCAATTGGGAGGGCTCAAGAGCAACGCCGCCACTTCATTACTTCAGCAAGAGAAGAGCCCGGTTCCTTTTGTGCCTCAAAAGGGCTTTTCTTTTCTCCCTTTGTGTTCCTTCTGGCTGCTTCGGGAGTCCGCTGTGGAAAAGGACAGTTGAATGCAGCCTCCGACGTGCACAAAAGAATGGGTTTCCATTCAAGGTGGCCATTGGTGGGACCTGCACCAACGGcattgtgcctgtgtgtgttcagCATGCTGCTGTGCCTGCCGTCTCCTGCGTCATGCACAACCTGCCCCCAGAAATGCCGTTGCGAAGACCAGCAGTTCTACTGCGACACCCAAGGACTGGAGGCGCCCCCGGACGGCGTTGACAGGGGGGCCCTGGGGTTATCGCTCCGCCACAACAGCATCGCTGAACTGAGCCCGGACCAGTTCTATGGCTTCTCCCAGCTCACCTGGCTCCACTTGGACCACAACCAGATCACCACGGTGCAGGAGGACGCATTCCAGGGGCTCTACAAACTCAAAGACCTCAACCTGAGCTCCAACCGGATCACAACTCTGCCAAACACAACCTTCATCCACCTCATCAACCTACAGATCTTAGATCTGTCCTTCAACCTGATGACTGCGCTGGAGCCTGAGCTGTTCCATGGCCTCCGCAAGCTGCAGATCCTCCACCTGCGCTCCAACTCGCTGCGCACCACCCCCGTCCGGGCCTTCTGGGACTGCCGCAGCCTCGAGTACCTGGGTCTGTCCAACAACCGGCTGCGAAGCCTGGCCCGGAACGGCTTCGCTGGCCTCATTAAACTCAGAGAACTCCACTTGGAACACAACCAGCTGACTAAGATCAATCTGGCTCATTTCCCCCGTCTGGTGGCTCTGCAGTTCCTTTATCTGCAGTGGAACAAGATCTCCAACCTGACCTGCAACATGGAGTGGACCTGGACCACGCTGGAGAAGATGGACCTCACAGGGAACGAGATCCGGGTGCTGACCCCGGACGTGTTCGAGACGCTGCCCAATCTGAAGATCCTCCTATTGGATAACAACAAGCTAGGCAGCCTGGACCCTCTGGTCTTGGATATGTGGCGGTCTCTAGGTACCGTGGGGCTGTCCAGCAACCTTTGGGAATGTACCAAAGGGATCTGCTCGCTGGCCACTTGGCTTAGCACCTTCAAGGGGAGGTGGGAACACTCTATCCTGTGTCACACCCCCGAGTACGCCCAGGGCGAGGAGATACTGGATGCCGTTTATGGATTCCAACTTTGCCCAAATTTTACGGCGCCGCCACCGGTCGTCTTGACCACAAACACATTGTCGATGGCCACGGACACGGCGACAGGCACAACTGTGGAGGTCACCAGCTCGCTGTTTGGAATAATGCAGCAGACACCAACGCAGGACTTCTATGTGGATTTTGGGCGCTTTACGACCATAATGACAACGACCACCACGCCGCGCACCGCCCTGGCAACCGCCTTGGCAACCTCCGCCACGACAGTGGAGGGCGGAGAGCTGGGAGTCACGGAGGACTTCTCGGAGACTGACAACACGGTCCTAACCCAGAGGGTGATCATTGGAACTATGGTCCTTCTGTTTACATTCTTCCTCATCATTTTCGTTGTGTTCATCTCGCGGAAGTGCTGCCCTCCTACCATGCGCAGGATACGCCAGTGCTCGGCCATGCAGAACCGCCGCCAGATGAGGACCCAGCAGCGGCAGCAAATGGCGGACCTGGCCACGCAGGTACCCTATAACGAGTACGAGCCCAGCCACGAGGAGGGAGCGCTGGTTATCATCAACGGCTACGGGCAGTGCAAGTGTCAACAGCTGCCTTACAAAGAGTGTGAAGTATAAACTATGTATTCCTCCTGCAGCAGCATATGGGCTGTTTACCATTCTAAATACAGGGTTTAATTTTTtttgcctctttctctcccccccccccccccccagtttacaaaaaaaaataaaaagcataaTTTCTACTCGCTAGCTTTGAGAAATCAATGAGATTAGTGTATTGAGTGGGAGAGTTGATGGCTGGTGGAAATGAACAGTGACGAGACTGATGAGGACGTAGTAGATATAGTCACCATTTATTTTTATATGAATGTTCATATCAAGCTGTGGGCAATCagtcttaaaaaaaaaagaaaactgtAGTGATTTATCACCACATTGTTATTTCACTTTCTGCAGCAAGGAGAAGGTTTTATTTTTTTGCCAAAACATCTGTAGACTGATCCTCTTACTGAGAGACGGCACAGATACAAAATAGGTGGTGGTCTATATCATGATATCATTATCAAGACAGATACAAATTGGTGGGCTATATCACGATATCATTATCAAGACACAGATACAAATAGACAGAGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACAGATACAAATAGGTGGGCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTGGTCTATATCATGATATCATTATCAAGACAGATACAAATAGACGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTGGTCTATATCATGATATCATTATCAAGACAGATACAAATAGACGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGTTGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGTTGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGGTGGTGGTCTATATCATGATATCATTATCAAGGGGAATCTGTGGCGGAAAGGACCGTGGATTATAATGACAGGTTTTAAAGATGCACGGTAGCCACAGTATGTTACTATCACAATGACGTGTTGGTACAGAAGTGATTCAAATGGGGTTTTGGTTATTCaattaaaaaatttttttttttttttccacatttgttacgtttttttttttgttgtaaattactatgaatattgaataaatgttttatttatgtcACAATCTGAATTAAATCTCCAACAGAAAATCTAATCTGATAAACATTACTTGGCTTATATTTATATTTCAAAAATGTGcatttcctctctgtgtctctgtctgtgtgtctctctgtctgtgtgtctctctgtctgtgtgtctctctgtct
>XR_005041129.1
agagagagagagagagagagagagaaagagagagagagagagagaaacagcactGATGTTCGACGCCAGGCTGCCACCACTCTGTAGTGGTGAGTGGCTGCAACAAAAGCTCAGAATAACATCCCTGGCTTTCCGCTCGTCTTTTCTCTCTGCGTCGTTAGCTGGCTGCTCGGGACGCCCAGCGCCCGTAGGAGGAGAGTTGCTCCCTCCAACATACTGATCGCTGCAGTAGGCTGTGCTGGTCACCACAGACCGACCAACCCAACGGCTCTCTGCCTGCCGGGTATCCCTGCCATCAACAAGTTAGGGGCAGGACGACTAAGGGATGGAgaggaccccccccccaccacctctcaGCCAAGAGGGGCACTATTTGATACTCAATTAACCAATTGAGCTGACATCATTGCAGTgtggaaggaggagggaaggaataCGAGGAAACAGTGTTTAAGAGCCAGGGAGCTTTGGCAGCAAATCAACTAAAAACGAAGAtaccaaaaaaaacaaaacaaaaaacagccCTTTGGATAATGTGTGATTAAAAAACGCCAGAGGGGAAGATCACAACTAGGACCCGACAACATAATCAACCAGGGACATGGGATTTGTGATTTCGTTTCAATTGGGAGGGCTCAAGAGCAACGCCGCCACTTCATTACTTCAGCAAGAGAAGAGCCCGGTTCCTTTTGTGCCTCAAAAGGGCTTTTCTTTTCTCCCTTTGTGTTCCTTCTGGCTGCTTCGGGAGTCCGCTGTGGAAAAGGACAGTTGAATGCAGCCTCCGACGTGCACAAAAGAATGGGTTTCCATTCAAGGTGGCCATTGGTGGGACCTGCACCAACGGcattgtgcctgtgtgtgttcagCATGCTGCTGTGCCTGCCGTCTCCTGCGTCATGCACAACCTGCCCCCAGAAATGCCGTTGCGAAGACCAGCAGTTCTACTGCGACACCCAAGGACTGGAGGCGCCCCCGGACGGCGTTGACAGGGGGGCCCTGGGGTTATCGCTCCGCCACAACAGCATCGCTGAACTGAGCCCGGACCAGTTCTATGGCTTCTCCCAGCTCACCTGGCTCCACTTGGACCACAACCAGATCACCACGGTGCAGGAGGACGCATTCCAGGGGCTCTACAAACTCAAAGACCTCAACCTGAGCTCCAACCGGATCACAACTCTGCCAAACACAACCTTCATCCACCTCATCAACCTACAGATCTTAGATCTGTCCTTCAACCTGATGACTGCGCTGGAGCCTGAGCTGTTCCATGGCCTCCGCAAGCTGCAGATCCTCCACCTGCGCTCCAACTCGCTGCGCACCACCCCCGTCCGGGCCTTCTGGGACTGCCGCAGCCTCGAGTACCTGGGTCTGTCCAACAACCGGCTGCGAAGCCTGGCCCGGAACGGCTTCGCTGGCCTCATTAAACTCAGAGAACTCCACTTGGAACACAACCAGCTGACTAAGATCAATCTGGCTCATTTCCCCCGTCTGGTGGCTCTGCAGTTCCTTTATCTGCAGTGGAACAAGATCTCCAACCTGACCTGCAACATGGAGTGGACCTGGACCACGCTGGAGAAGATGGACCTCACAGGGAACGAGATCCGGGTGCTGACCCCGGACGTGTTCGAGACGCTGCCCAATCTGAAGATCCTCCTATTGGATAACAACAAGCTAGGCAGCCTGGACCCTCTGGTCTTGGATATGTGGCGGTCTCTAGGTACCGTGGGGCTGTCCAGCAACCTTTGGGAATGTACCAAAGGGATCTGCTCGCTGGCCACTTGGCTTAGCACCTTCAAGGGGAGGTGGGAACACTCTATCCTGTGTCACACCCCCGAGTACGCCCAGGGCGAGGAGATACTGGATGCCGTTTATGGATTCCAACTTTGCCCAAATTTTACGGCGCCGCCACCGGTCGTCTTGACCACAAACACATTGTCGATGGCCACGGACACGGCGACAGGCACAACTGTGGAGGTCACCAGCTCGCTGTTTGGAATAATGCAGCAGACACCAACGCAGGACTTCTATGTGGATTTTGGGCGCTTTACGACCATAATGACAACGACCACCACGCCGCGCACCGCCCTGGCAACCGCCTTGGCAACCTCCGCCACGACAGTGGAGGGCGGAGAGCTGGGAGTCACGGAGGACTTCTCGGAGACTGACAACACGGTCCTAACCCAGAGGGTGATCATTGGAACTATGGTCCTTCTGTTTACATTCTTCCTCATCATTTTCGTTGTGTTCATCTCGCGGAAGTGCTGCCCTCCTACCATGCGCAGGATACGCCAGTGCTCGGCCATGCAGAACCGCCGCCAGATGAGGACCCAGCAGCGGCAGCAAATGGCGGACCTGGCCACGCAGGTACCCTATAACGAGTACGAGCCCAGCCACGAGGAGGGAGCGCTGGTTATCATCAACGGCTACGGGCAGTGCAAGTGTCAACAGCTGCCTTACAAAGAGTGTGAAGTATAAACTATGTATTCCTCCTGCAGCAGCATATGGGCTGTTTACCATTCTAAATACAGGGTTTAATTTTTtttgcctctttctctcccccccccccccccccagtttacaaaaaaaaataaaaagcataaTTTCTACTCGCTAGCTTTGAGAAATCAATGAGATTAGTGTATTGAGTGGGAGAGTTGATGGCTGGTGGAAATGAACAGTGACGAGACTGATGAGGACGTAGTAGATATAGTCACCATTTATTTTTATATGAATGTTCATATCAAGCTGTGGGCAATCagtcttaaaaaaaaaagaaaactgtAGTGATTTATCACCACATTGTTATTTCACTTTCTGCAGCAAGGAGAAGGTTTTATTTTTTTGCCAAAACATCTGTAGACTGATCCTCTTACTGAGAGACGGCACAGATACAAAATAGGTGGTGGTCTATATCATGATATCATTATCAAGACAGATACAAATTGATGGTCTATATCATGATATCATTATCAAGACAGATACAAATAGGTGGGCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTGGTCTATATCATGATATCATTATCAAGACAGATACAAATAGACGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTGGTCTATATCATGATATCATTATCAAGACAGATACAAATAGACGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGTTGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGTTGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGGTGGTGGTCTATATCATGATATCATTATCAAGGGGAATCTGTGGCGGAAAGGACCGTGGATTATAATGACAGGTTTTAAAGATGCACGGTAGCCACAGTATGTTACTATCACAATGACGTGTTGGTACAGAAGTGATTCAAATGGGGTTTTGGTTATTCaattaaaaaatttttttttttttttccacatttgttacgtttttttttttgttgtaaattactatgaatattgaataaatgttttatttatgtcACAATCTGAATTAAATCTCCAACAGAAAATCTAATCTGATAAACATTACTTGGCTTATATTTATATTTCAAAAATGTGcatttcctctctgtgtctctgtctgtgtgtctctctgtctgtgtgtctctctgtctgtgtgtctctctgtct
>TU2567411
gcataaTTTCTACTCGCTAGCTTTGAGAAATCAATGAGATTAGTGTATTGAGTGGGAGAGTTGATGGCTGGTGGAAATGAACAGTGACGAGACTGATGAGGACGTAGTAGATATAGTCACCATTTATTTTTATATGAATGTTCATATCAAGCTGTGGGCAATCagtcttaaaaaaaaaagaaaactgtAGTGATTTATCACCACATTGTTATTTCACTTTCTGCAGCAAGGAGAAGGTTTTATTTTTTTGCCAAAACATCTGTAGACTGATCCTCTTACTGAGAGACGGCACAGATACAAAATAGGTGGTGGTCTATATCATGATATCATTATCAAGACAGATACAAATTGGTGGGCTATATCACGATATCATTATCAAGACACAGATACAAATAGACAGAGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACAGATACAAATAGGTGGGCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTGGTCTATATCATGATATCATTATCAAGACAGATACAAATAGACGGTCTATATCATGATATCATTATCAAGACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGGTGGTGGTCTATATCATGATATCATTATCAAGGGGAATCTGTGGCGGAAAGGACCGTGGATTATAATGACAGGTTTTAAAGATGCACGGTAGCCACAGTATGTTACTATCACAATGACGTGTTGGTACAGAAGTGATTCAAATGGGGTTTTGGTTATTCaattaaaaaatttttttttttttttccacatttgttacgtttttttttttgttgtaaattactatgaatattgaataaatgttttatttatgtcACAATCTGAATTAAATCTCCAACAGAAAATCTAA
>TU2567414
gcataaTTTCTACTCGCTAGCTTTGAGAAATCAATGAGATTAGTGTATTGAGTGGGAGAGTTGATGGCTGGTGGAAATGAACAGTGACGAGACTGATGAGGACGTAGTAGATATAGTCACCATTTATTTTTATATGAATGTTCATATCAAGCTGTGGGCAATCagtcttaaaaaaaaaagaaaactgtAGTGATTTATCACCACATTGTTATTTCACTTTCTGCAGCAAGGAGAAGGTTTTATTTTTTTGCCAAAACATCTGTAGACTGATCCTCTTACTGAGAGACGGCACAGATACAAAATAGGTGGTGGTCTATATCATGATATCATTATCAAGACAGATACAAATTGGTGGGCTATATCACGATATCATTATCAAGACACAGATACAAATAGACAGAGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACAGATACAAATAGGTGGGCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGATGATGGTCTATATCATGATATCATTATCAAGACACAGATACAAATAGGTGGTGGTCTATATCATGATATCATTATCAAGGGGAATCTGTGGCGGAAAGGACCGTGGATTATAATGACAGGTTTTAAAGATGCACGGTAGCCACAGTATGTTACTATCACAATGACGTGTTGGTACAGAAGTGATTCAAATGGGGTTTTGGTTATTCaattaaaaaatttttttttttttttccacatttgttacgtttttttttttgttgtaaattactatgaatattgaataaatgttttatttatgtcACAATCTGAATTAAATCTCCAACAGAAAATCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583225.2 False 4083 mRNA 0.47 2 4589433 4594305
XR_005041129.1 False 3990 mRNA 0.47 3 4589433 4594305
TU2567411 False 998 lncRNA 0.33 2 4589549 4590921
TU2567414 True 912 lncRNA 0.33 2 4589549 4590921

Neighbor

gene id symbol gene type direction distance location
LOC110513918 syub coding downstream 298942 4236169 ~ 4290491 (-)
LOC110504518 LOC106612310 coding downstream 389490 4130654 ~ 4199943 (-)
higd2a LOC106612309 coding downstream 488717 4098767 ~ 4100716 (-)
LOC110489654 LOC104930052 coding downstream 531267 3968916 ~ 4058166 (-)
LOC118946073 NA coding downstream 620627 3967634 ~ 3968806 (-)
LOC118945992 NA coding upstream 193134 4787439 ~ 4788320 (-)
LOC110504358 LOC106604155 coding upstream 894424 5488729 ~ 5526792 (-)
LOC110504491 LOC106604157 coding upstream 938554 5532859 ~ 5604780 (-)
LOC110504359 LOC106612272 coding upstream 1113113 5707418 ~ 5731006 (-)
LOC118946011 NA coding upstream 1144989 5739294 ~ 5740052 (-)
G2245183 NA non-coding downstream 11664 4577394 ~ 4577769 (-)
G2245168 NA non-coding downstream 38027 4550665 ~ 4551406 (-)
G2245166 NA non-coding downstream 45562 4543285 ~ 4543871 (-)
G2245129 NA non-coding downstream 122931 4466290 ~ 4466502 (-)
G2245128 NA non-coding downstream 131426 4457649 ~ 4458007 (-)
G2245211 ctnna1 non-coding upstream 37675 4631980 ~ 4662931 (-)
G2245219 NA non-coding upstream 64382 4658687 ~ 4696522 (-)
G2245238 NA non-coding upstream 113876 4708181 ~ 4708384 (-)
G2245260 NA non-coding upstream 130112 4724417 ~ 4724733 (-)
G2245265 NA non-coding upstream 135047 4729352 ~ 4729707 (-)
G2244811 NA other downstream 476432 4111702 ~ 4113001 (-)
G2243801 NA other downstream 1651891 2936604 ~ 2937542 (-)
G2243777 NA other downstream 1701974 2885291 ~ 2887459 (-)
si:ch211-274f20.2 LOC106612323 other downstream 2004247 2575623 ~ 2585197 (-)
G2246314 NA other upstream 1253814 5848119 ~ 5852599 (-)
G2247416 NA other upstream 2276282 6870587 ~ 6871100 (-)
G2247565 NA other upstream 2344318 6938623 ~ 7024539 (-)
G2247813 NA other upstream 2661039 7255344 ~ 7255940 (-)
G2248522 NA other upstream 3446571 8040876 ~ 8041480 (-)

Expression


Co-expression Network