LOC110504483 (LOC106612297)


Basic Information

Item Value
gene id LOC110504483
gene name LOC106612297
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 7835243 ~ 7849870 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041150.1
GTTGTCACTGCGTGGAGAGATCACACTGAATAGATGATTAACCAGGTCCCAGGGGAAGGAGAAGGAGCGGACAGGTCCCTCTCACTTTCACGATGCGGGGCATGCAGGAGAGTATGTGGGTCCTACCTCTGGTTCTACTGGGGCTGTTAAAGCCCTGGGCTGCAGGCTACTCACTCAGTCAGGTGTGTGACCCATCTAAAGATGGCACGATCTATAACTACAAAGCTAAGACACTGAATGGGAGTCGTTCAGTCTCCCTCAGTGAGTACATGGGGAAGACCGTCCTCTTCGTCAACGTAGCCACTTACTGAGGACTCACCTTCCAGTACCTGGAGTTGAATGCACTACACGAGGAGATGAAGGATTATGGGTTTACCATTCTCGGGTTCCCCTCCAATCAGTTTGGAAAACAGGAGCCAGGAGAAAATCATGAGATTCTGGCCACTCTAAAGCATGTCCGACCAGGAAATGGATTTGTTCCAAACTTCCTGCTATTCCAGAGGGGGGATGTGAACGGAGACACAGAACAAGGAGTCTACACTTTCCTTAAAAACTCCTGCCCGCCAGTAGGGGACAGCTTTGAGAACCCCACCAACAGGCTGTTCTGGGAGCCCCTGAAGATCAACGACATCAAGTGGAACTTTGAGAAGTTCCTGGTCGGACCGGATGGGAAGCCCGTGATGAGGTGGTTCCCCCGGGTCCCAGTGTCTGAGGTTCGGGAGGACATCCTCAAATACATCCGTCAACTCTTCTCCCAGTCCACCCAGCAGAACATTGACTAAGATTTAacgtgccccaaatggcaccctaatcccaagatagtgcactactggaaATTCTCCAAttcaccagggcccacagggctctggtcaaaagtagtgcactatattgggaatatggtgccatttaggatgcggCCTGTGTTATCAGGGCTGGGGTCGATTCCATGTCAATGGAGTAAATTCCTGTATTGAAATTCAGCCTACAGATTTATTAGATTCCCCTTTTAGATGCACGAAAACACAGTGGACTGGTTTCCAGGGTCCAGATTACACCTCTttctggactaaaaagcactttcaatggaAATTCTCCAATGAGTATGCTGTCATTTTATTCCAAGAGTAGGCTGAATCTGGATCAAGGAAACCAATGTCATAAAACACTATTttccccccatccttgtcgaaaACCTCTGACAAGCCATGTATGTGTAGAATAGAACATCATTCAACTGATTCGTAGAAGAAAATGTCAATCAATTCAAATGTATGGCTGGCTGTGGTGGTAGTGGGTAAGGGTCGTAGAGGAGGTGGCATGTTGTATGAAGGTGAGGCTTGAAAACAGAGCGTCTGTGGTGCCAAACCTGAGTTCTAGGGTCCAGGCCAGTCCTTCAGTGCATTCAGGCTGGGCCTGGTAACCCTGGGAGTCATGTTACCTCCTGGTCCTGCCACCTGACTAATTCATGTCAATAAATCACGTCAGTATAA
>TU2571256
GGGGAAGGAGAAGGAGCGGACAGGTCCCTCTCACTTTCACGATGCGGGGCATGCAGGAGAGTATGTGGGTCCTACCTCTGGTTCTACTGGGGCTGTTAAAGCCCTGGGCTGCAGGCTACTCACTCAGTCAGGTGTGTGACCCATCTAAAGATGGCACGATCTATAACTACAAAGCTAAGACACTGAATGGGAGTCGTTCAGTCTCCCTCAGTGAGTACATGGGGAAGACCGTCCTCTTCGTCAACGTAGCCACTTACTGAGGACTCACCTTCCAGTACCTGGAGTTGAATGCACTACACGAGGAGATGAAGGATTATGGGTTTACCATTCTCGGGTTCCCCTCCAATCAGTTTGGAAAACAGGAGCCAGGAGAAAATCATGAGATTCTGGCCACTCTAAAGCATGTCCGACCAGGAAATGGATTTGTTCCAAACTTCCTGCTATTCCAGAGGGGGGATGTGAACGGAGACACAGAACAAGGAGTCTACACTTTCCTTAAAACTCCTGCCCGCCAGTAGGGGACAGCTTTGAGAACCCCACCAACAGGCTGTTCTGGGAGCCCCTGAAGATCAACGACATCAAGTGGAACTTTGAGAAGTTCCTGGTCGGACCGGATGGGAAGCCCGTGATGAGGTGGTTCCCCCGGGTCCCAGTGTCTGAGGTTCGGGAGGACATCCTCAAATACATCCGTCAACTCTTCTCCCAGTCCACCCAGCAGAACATTGACTAAGATTTAacgtgccccaaatggcaccctaatcccaagatagtgcactactggaaATTCTCCAAttcaccagggcccacagggctctggtcaaaagtagtgcactatattgggaatatggtgccatttaggatgcggCCTGTGTTATCAGGGCTGGGGTCGATTCCATGTCAATGGAGTAAATTCCTGTATTGAAATTCAGCCTACAGATTTATTAGATTCCCCTTTTAGATGCACGAAAACACAGTGGACTGGTTTCCAGGGTCCAGATTACACCTCTttctggactaaaaagcactttcaatggaAATTCTCCAATGAGTATGCTGTCATTTTATTCCAAGAGTAGGCTGAATCTGGATCAAGGAAACCAATGTCATAAAACACTATTttccccccatccttgtcgaaaACCTCTGACAAGCCATGTATGTGTAGAATAGAACATCATTCAACTGATTCGTAGAAGAAAATGTCAATCAATTCAAATGTATGGCTGGCTGTGGTGGTAGTGGGTAAGGGTCGTAGAGGAGGTGGCATGTTGTATGAAGGTGAGGCTTGAAAACAGAGCGTCTGTGGTGCCAAACCTGAGTTCTAGGGTCCAGGCCAGTCCTTCAGTGCATTCAGGCTGGGCCTGGTAACCCTGGGAGTCATGTTACCTCCTGGTCCTGCCACCTGACTAATTCATGTCAATAAATCACGTCAGTATAA

Function

NR:

description
glutathione peroxidase 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041150.1 False 1490 mRNA 0.49 5 7835243 7849870
TU2571256 True 1438 lncRNA 0.49 5 7835243 7849819

Neighbor

gene id symbol gene type direction distance location
LOC110504480 LOC106612296 coding downstream 109451 7698183 ~ 7725792 (-)
LOC110504506 LOC106612265 coding downstream 633743 7127869 ~ 7201500 (-)
LOC110504499 LOC106604166 coding downstream 1412814 6116114 ~ 6422429 (-)
LOC118946011 NA coding downstream 2095191 5739294 ~ 5740052 (-)
LOC110504359 LOC106612272 coding downstream 2104237 5707418 ~ 5731006 (-)
LOC110504356 LOC106612292 coding upstream 8255 7858125 ~ 7871099 (-)
LOC110504484 smad5 coding upstream 22024 7871894 ~ 7892178 (-)
LOC110504485 tgfbi coding upstream 46841 7896711 ~ 7926759 (-)
LOC110504508 LOC106612286 coding upstream 241164 8091034 ~ 8104745 (-)
LOC110504516 LOC106612282 coding upstream 323351 8173221 ~ 8224552 (-)
G2248407 NA non-coding downstream 40650 7794342 ~ 7794593 (-)
G2248354 NA non-coding downstream 48789 7785638 ~ 7786454 (-)
G2248388 NA non-coding downstream 99632 7735126 ~ 7735611 (-)
G2248143 NA non-coding downstream 232931 7601756 ~ 7602312 (-)
G2248135 NA non-coding downstream 242118 7592466 ~ 7593125 (-)
G2248436 NA non-coding upstream 873 7850743 ~ 7851049 (-)
G2248432 NA non-coding upstream 1495 7851365 ~ 7851589 (-)
G2248439 NA non-coding upstream 13745 7863615 ~ 7864572 (-)
G2248456 NA non-coding upstream 78656 7928526 ~ 7929157 (-)
G2248500 LOC106594768 non-coding upstream 163490 8013360 ~ 8016525 (-)
G2247813 NA other downstream 579303 7255344 ~ 7255940 (-)
G2247565 NA other downstream 810704 6938623 ~ 7024539 (-)
G2247416 NA other downstream 964143 6870587 ~ 6871100 (-)
G2246314 NA other downstream 1982644 5848119 ~ 5852599 (-)
G2245152 ctnna1 other downstream 3213253 4535841 ~ 4621990 (-)
G2248522 NA other upstream 191006 8040876 ~ 8041480 (-)
G2248668 LOC106612284 other upstream 304041 8153911 ~ 8157963 (-)
c1qtnf2 c1qtnf2 other upstream 1296921 9145591 ~ 9148916 (-)
G2249506 NA other upstream 1300018 9149888 ~ 9150141 (-)
G2250247 NA other upstream 2102447 9952317 ~ 9952703 (-)

Expression


Co-expression Network