LOC110504538 (g3bp1)


Basic Information

Item Value
gene id LOC110504538
gene name g3bp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 8616964 ~ 8627201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583300.2
atcaCGGTAGGTTGTCCATGTCCCACAGTTGAGACCGGTAAAAGAGCAGCCGAACACGTTGTGCGGTGCCCTGCTAGAACAATCATTCTAGCTACCGCCTGGCAGAGCGGAGGTGATTCAGTGAAATCACTTTATTAACGATTTGAACAATTGCCTGCTGttctctccagctGACCAAGGAAATGGTGATGGAGAAGCCAAGTGCCCAGCTCGTCGGGCGGGAGTTTGTCCGACAGTACTACACACTACTCAACCAGGCACCTGACTACCTGCACAGGTTTTATGGGAAGAACTCTTCCTATGTACATGGAGGTCTGGACAACAATGGCAAACCAGTTGAAGCGGTCTACGGACAGTCGGAGATCCATAAAAAGGTGTTGGCGCTGAACTTTCGTGACTGCCACACCAAGATCAGACACGTGGACGCCCATGCGACCTTGAACGAGGGCGTGGTGGTGCAAGTGATGGGGGAGCTGTCCAACGACATGCAGCCCATGCGCAAATTCATGCAGACGTTCGTGCTGGCCCCTGAGGGCACTGTAGCAAACAAGTTCTACGTTCACAACGATGTATTCCGTTACCAAGACGAAGTGTTTGGGGATTCTGACTCAGAACCCCCTGAAGAGTCTGACGAGgatgtggaggagatggaggagagggtacCGTCACCAGAGGTGAACCAGGAAGAGGCTGCGGGCTTCTACGAACAGACACCATGCACCGAGCCAGAGGGgctagtggaggaggaggtggctgTAACCCCAGAGCCTGAACCTGAGGCGGAGCCAGATCCAGACGTGGTGGATGGAAAACCGGTCCTGGAGCCAGAGACCCAGCAGCAACACCACACTACAGAGGAGCAGGCAGAGAAGTGTCCTGTCTCCTCACCCCTGCCCTCTGCCACTGCTGACCCTGCCCCTGCACCCGCTGCTGAAGATAACCGGCCTTTCTCCTGGGCGTCTGTCACCAGTAAGAACCTTCCCCCTAGCGGCGCTGTCCCCGTCTCTGGCATCCCCCCCCACGTCGTCAAAGTCCCCTCGGCAACGCCCAGGGTGGAGGTGAAAACCGAAGCCGCAGCACAGAGAACACAACCgagaggagaccagagaccaCGGGAACCAAGGCCCGGCCCCCCACCAGTCAGAGGACCCCGACCAGGAGTGCGGGAAGGAGAGCAGGGAGAGTCGTCAGAGGTTCGCCGTGTGGTGAGGTATCCAGACGCTCACCAGCTCTTCGTCGGAAACGTCCCCCATGATGTGGACAAGGCAGAGCTCAAGGACTTTTTCCAACAGTATGGTTCTGTGCTTGAGCTACGGATCAACAGCGGAGGGAAGCTTCCCAACTTTGGCTTCGTGGTGTTTGACGATTTTGAACCTGTACAGAAAATCCTAAGCAACCGGCCCATTAAGTTCAGAGGAGACATCCGACTGAACGTGGAGGAAAAAAAGACGCGCTCCGCCCGGGAAGGGGACCGGCGAGACATCCGCCCCAGAGGTCCAGGTGGCCCCGGAGGGCCccgagagaggataggagggccCAGAGGCCCCCCCACCAGGGGTGGCATGACACAGAAACCCAGCTTTGGCTCTGGACGAGGTACTGGACCCAGTGAAGGAGGTCGCTACATGGGACCTCGTCAGTGAACATCACTCTGTTGGTCTAATGTACCATGCCAGCTACAACTGCTGATGTCAGTCGCCCCGACTCGAGTATTGTACAAAGATggcttctccatccctccctccatcccgttctctttttgttttctacCCTGGGATTCTGGAATGTgatccatctctcctttctcccgaCATTGACATGATCTGGGCATTTCTCCTCGTCTTTTACGTCCCGAACTTGAATTTGTGGAAAGAAAGTAAAGAGTCTAAACTAACTAGTTGAATTGGAACAGCCCAGTTTGGTTTTAGCGTTCTCTCCCTGTTTCTTAAAGGAACGTGTAAGTACTGCCTGGGCAGTCCTGTGTATCGCTACCACTGTCTTTTCAGGTCAAATGCAAGTATGGTTTTATTTTAAATTGCCAAATTGAATCATGGTTGTGAATGGTTATTATCGAGCATGTAACAAGTCCTGTCTGCCTTTTCACTGATGCACTTCATCATGACAATACCAATCAGCTGATGAGAGAACTGAATAAACATTATTTACTGTTTTAAA
>XM_021583301.2
AGTACATGTCTTTGTCTATCATCTCATATCTCTCGGCCTGTGTGCACCTAAATTGTGAACGTTCATTCGtaagctaggttgtagcaacctcgtgatgggtatagggacaatttgagtatcatgtggtagcctaaacctattgatggtAGATTGAACTGGGTGACTGTTAATTATATtccagtcatccaatatgctgtaatagaaataaggctatGTGGACTCATCTttgaaagagaccttggtctcagcacgACTTCCTCTTAAAATAAAGCTTAAATTAAAAATGTGTGCCGGGGTAGCTGAACCAAGTGCAACGAAACATACCCCTGACAATTAAGTTCGGGGCCATGATCCGGCGTGCTGCTGCGCCGTCGTCTCGGTCTCCTAATCCACCACGTCTCCTATTGGCTACATTTAGAACGACAGttctctccagctGACCAAGGAAATGGTGATGGAGAAGCCAAGTGCCCAGCTCGTCGGGCGGGAGTTTGTCCGACAGTACTACACACTACTCAACCAGGCACCTGACTACCTGCACAGGTTTTATGGGAAGAACTCTTCCTATGTACATGGAGGTCTGGACAACAATGGCAAACCAGTTGAAGCGGTCTACGGACAGTCGGAGATCCATAAAAAGGTGTTGGCGCTGAACTTTCGTGACTGCCACACCAAGATCAGACACGTGGACGCCCATGCGACCTTGAACGAGGGCGTGGTGGTGCAAGTGATGGGGGAGCTGTCCAACGACATGCAGCCCATGCGCAAATTCATGCAGACGTTCGTGCTGGCCCCTGAGGGCACTGTAGCAAACAAGTTCTACGTTCACAACGATGTATTCCGTTACCAAGACGAAGTGTTTGGGGATTCTGACTCAGAACCCCCTGAAGAGTCTGACGAGgatgtggaggagatggaggagagggtacCGTCACCAGAGGTGAACCAGGAAGAGGCTGCGGGCTTCTACGAACAGACACCATGCACCGAGCCAGAGGGgctagtggaggaggaggtggctgTAACCCCAGAGCCTGAACCTGAGGCGGAGCCAGATCCAGACGTGGTGGATGGAAAACCGGTCCTGGAGCCAGAGACCCAGCAGCAACACCACACTACAGAGGAGCAGGCAGAGAAGTGTCCTGTCTCCTCACCCCTGCCCTCTGCCACTGCTGACCCTGCCCCTGCACCCGCTGCTGAAGATAACCGGCCTTTCTCCTGGGCGTCTGTCACCAGTAAGAACCTTCCCCCTAGCGGCGCTGTCCCCGTCTCTGGCATCCCCCCCCACGTCGTCAAAGTCCCCTCGGCAACGCCCAGGGTGGAGGTGAAAACCGAAGCCGCAGCACAGAGAACACAACCgagaggagaccagagaccaCGGGAACCAAGGCCCGGCCCCCCACCAGTCAGAGGACCCCGACCAGGAGTGCGGGAAGGAGAGCAGGGAGAGTCGTCAGAGGTTCGCCGTGTGGTGAGGTATCCAGACGCTCACCAGCTCTTCGTCGGAAACGTCCCCCATGATGTGGACAAGGCAGAGCTCAAGGACTTTTTCCAACAGTATGGTTCTGTGCTTGAGCTACGGATCAACAGCGGAGGGAAGCTTCCCAACTTTGGCTTCGTGGTGTTTGACGATTTTGAACCTGTACAGAAAATCCTAAGCAACCGGCCCATTAAGTTCAGAGGAGACATCCGACTGAACGTGGAGGAAAAAAAGACGCGCTCCGCCCGGGAAGGGGACCGGCGAGACATCCGCCCCAGAGGTCCAGGTGGCCCCGGAGGGCCccgagagaggataggagggccCAGAGGCCCCCCCACCAGGGGTGGCATGACACAGAAACCCAGCTTTGGCTCTGGACGAGGTACTGGACCCAGTGAAGGAGGTCGCTACATGGGACCTCGTCAGTGAACATCACTCTGTTGGTCTAATGTACCATGCCAGCTACAACTGCTGATGTCAGTCGCCCCGACTCGAGTATTGTACAAAGATggcttctccatccctccctccatcccgttctctttttgttttctacCCTGGGATTCTGGAATGTgatccatctctcctttctcccgaCATTGACATGATCTGGGCATTTCTCCTCGTCTTTTACGTCCCGAACTTGAATTTGTGGAAAGAAAGTAAAGAGTCTAAACTAACTAGTTGAATTGGAACAGCCCAGTTTGGTTTTAGCGTTCTCTCCCTGTTTCTTAAAGGAACGTGTAAGTACTGCCTGGGCAGTCCTGTGTATCGCTACCACTGTCTTTTCAGGTCAAATGCAAGTATGGTTTTATTTTAAATTGCCAAATTGAATCATGGTTGTGAATGGTTATTATCGAGCATGTAACAAGTCCTGTCTGCCTTTTCACTGATGCACTTCATCATGACAATACCAATCAGCTGATGAGAGAACTGAATAAACATTATTTACTGTTTTAAA
>XM_036970114.1
ACAATTGTGCACggggactgagtttgggaaaccatgCACTATATCAGCTAGATACAGGCTAGTGTGCAAGGCGttctctccagctGACCAAGGAAATGGTGATGGAGAAGCCAAGTGCCCAGCTCGTCGGGCGGGAGTTTGTCCGACAGTACTACACACTACTCAACCAGGCACCTGACTACCTGCACAGGTTTTATGGGAAGAACTCTTCCTATGTACATGGAGGTCTGGACAACAATGGCAAACCAGTTGAAGCGGTCTACGGACAGTCGGAGATCCATAAAAAGGTGTTGGCGCTGAACTTTCGTGACTGCCACACCAAGATCAGACACGTGGACGCCCATGCGACCTTGAACGAGGGCGTGGTGGTGCAAGTGATGGGGGAGCTGTCCAACGACATGCAGCCCATGCGCAAATTCATGCAGACGTTCGTGCTGGCCCCTGAGGGCACTGTAGCAAACAAGTTCTACGTTCACAACGATGTATTCCGTTACCAAGACGAAGTGTTTGGGGATTCTGACTCAGAACCCCCTGAAGAGTCTGACGAGgatgtggaggagatggaggagagggtacCGTCACCAGAGGTGAACCAGGAAGAGGCTGCGGGCTTCTACGAACAGACACCATGCACCGAGCCAGAGGGgctagtggaggaggaggtggctgTAACCCCAGAGCCTGAACCTGAGGCGGAGCCAGATCCAGACGTGGTGGATGGAAAACCGGTCCTGGAGCCAGAGACCCAGCAGCAACACCACACTACAGAGGAGCAGGCAGAGAAGTGTCCTGTCTCCTCACCCCTGCCCTCTGCCACTGCTGACCCTGCCCCTGCACCCGCTGCTGAAGATAACCGGCCTTTCTCCTGGGCGTCTGTCACCAGTAAGAACCTTCCCCCTAGCGGCGCTGTCCCCGTCTCTGGCATCCCCCCCCACGTCGTCAAAGTCCCCTCGGCAACGCCCAGGGTGGAGGTGAAAACCGAAGCCGCAGCACAGAGAACACAACCgagaggagaccagagaccaCGGGAACCAAGGCCCGGCCCCCCACCAGTCAGAGGACCCCGACCAGGAGTGCGGGAAGGAGAGCAGGGAGAGTCGTCAGAGGTTCGCCGTGTGGTGAGGTATCCAGACGCTCACCAGCTCTTCGTCGGAAACGTCCCCCATGATGTGGACAAGGCAGAGCTCAAGGACTTTTTCCAACAGTATGGTTCTGTGCTTGAGCTACGGATCAACAGCGGAGGGAAGCTTCCCAACTTTGGCTTCGTGGTGTTTGACGATTTTGAACCTGTACAGAAAATCCTAAGCAACCGGCCCATTAAGTTCAGAGGAGACATCCGACTGAACGTGGAGGAAAAAAAGACGCGCTCCGCCCGGGAAGGGGACCGGCGAGACATCCGCCCCAGAGGTCCAGGTGGCCCCGGAGGGCCccgagagaggataggagggccCAGAGGCCCCCCCACCAGGGGTGGCATGACACAGAAACCCAGCTTTGGCTCTGGACGAGGTACTGGACCCAGTGAAGGAGGTCGCTACATGGGACCTCGTCAGTGAACATCACTCTGTTGGTCTAATGTACCATGCCAGCTACAACTGCTGATGTCAGTCGCCCCGACTCGAGTATTGTACAAAGATggcttctccatccctccctccatcccgttctctttttgttttctacCCTGGGATTCTGGAATGTgatccatctctcctttctcccgaCATTGACATGATCTGGGCATTTCTCCTCGTCTTTTACGTCCCGAACTTGAATTTGTGGAAAGAAAGTAAAGAGTCTAAACTAACTAGTTGAATTGGAACAGCCCAGTTTGGTTTTAGCGTTCTCTCCCTGTTTCTTAAAGGAACGTGTAAGTACTGCCTGGGCAGTCCTGTGTATCGCTACCACTGTCTTTTCAGGTCAAATGCAAGTATGGTTTTATTTTAAATTGCCAAATTGAATCATGGTTGTGAATGGTTATTATCGAGCATGTAACAAGTCCTGTCTGCCTTTTCACTGATGCACTTCATCATGACAATACCAATCAGCTGATGAGAGAACTGAATAAACATTATTTACTGTTTTAAA
>XM_021583299.2
tgtgtttcTTGGTTTACTGTGCGTTTATTTACTAAAACACTcacttcctgactctcagcacaCATCGTTACAATTTCTtgaacggcattgttggttaagggcttgtaagtaagtaagtaagcaaagagaaatttgATGGAACTGacatgtccacccaatcaaaggatcagagaatgaatctagtactgaaagcataagctacagctagcctAGTACTGCATAACATGAGTAGTTGACTAAAAGTTAGAAATATAATAGTtttgaacaaatatttttttcaaaaatGGAGGGGAGAGTTTTCACTCATTTAGCtagcaaatgtagctagctatctagtttagcctactcaaacaacctgctcagagggatgctatgttaaccAGCTGGCTGAccatccaacactggaactccaagtcaagttctctccagctGACCAAGGAAATGGTGATGGAGAAGCCAAGTGCCCAGCTCGTCGGGCGGGAGTTTGTCCGACAGTACTACACACTACTCAACCAGGCACCTGACTACCTGCACAGGTTTTATGGGAAGAACTCTTCCTATGTACATGGAGGTCTGGACAACAATGGCAAACCAGTTGAAGCGGTCTACGGACAGTCGGAGATCCATAAAAAGGTGTTGGCGCTGAACTTTCGTGACTGCCACACCAAGATCAGACACGTGGACGCCCATGCGACCTTGAACGAGGGCGTGGTGGTGCAAGTGATGGGGGAGCTGTCCAACGACATGCAGCCCATGCGCAAATTCATGCAGACGTTCGTGCTGGCCCCTGAGGGCACTGTAGCAAACAAGTTCTACGTTCACAACGATGTATTCCGTTACCAAGACGAAGTGTTTGGGGATTCTGACTCAGAACCCCCTGAAGAGTCTGACGAGgatgtggaggagatggaggagagggtacCGTCACCAGAGGTGAACCAGGAAGAGGCTGCGGGCTTCTACGAACAGACACCATGCACCGAGCCAGAGGGgctagtggaggaggaggtggctgTAACCCCAGAGCCTGAACCTGAGGCGGAGCCAGATCCAGACGTGGTGGATGGAAAACCGGTCCTGGAGCCAGAGACCCAGCAGCAACACCACACTACAGAGGAGCAGGCAGAGAAGTGTCCTGTCTCCTCACCCCTGCCCTCTGCCACTGCTGACCCTGCCCCTGCACCCGCTGCTGAAGATAACCGGCCTTTCTCCTGGGCGTCTGTCACCAGTAAGAACCTTCCCCCTAGCGGCGCTGTCCCCGTCTCTGGCATCCCCCCCCACGTCGTCAAAGTCCCCTCGGCAACGCCCAGGGTGGAGGTGAAAACCGAAGCCGCAGCACAGAGAACACAACCgagaggagaccagagaccaCGGGAACCAAGGCCCGGCCCCCCACCAGTCAGAGGACCCCGACCAGGAGTGCGGGAAGGAGAGCAGGGAGAGTCGTCAGAGGTTCGCCGTGTGGTGAGGTATCCAGACGCTCACCAGCTCTTCGTCGGAAACGTCCCCCATGATGTGGACAAGGCAGAGCTCAAGGACTTTTTCCAACAGTATGGTTCTGTGCTTGAGCTACGGATCAACAGCGGAGGGAAGCTTCCCAACTTTGGCTTCGTGGTGTTTGACGATTTTGAACCTGTACAGAAAATCCTAAGCAACCGGCCCATTAAGTTCAGAGGAGACATCCGACTGAACGTGGAGGAAAAAAAGACGCGCTCCGCCCGGGAAGGGGACCGGCGAGACATCCGCCCCAGAGGTCCAGGTGGCCCCGGAGGGCCccgagagaggataggagggccCAGAGGCCCCCCCACCAGGGGTGGCATGACACAGAAACCCAGCTTTGGCTCTGGACGAGGTACTGGACCCAGTGAAGGAGGTCGCTACATGGGACCTCGTCAGTGAACATCACTCTGTTGGTCTAATGTACCATGCCAGCTACAACTGCTGATGTCAGTCGCCCCGACTCGAGTATTGTACAAAGATggcttctccatccctccctccatcccgttctctttttgttttctacCCTGGGATTCTGGAATGTgatccatctctcctttctcccgaCATTGACATGATCTGGGCATTTCTCCTCGTCTTTTACGTCCCGAACTTGAATTTGTGGAAAGAAAGTAAAGAGTCTAAACTAACTAGTTGAATTGGAACAGCCCAGTTTGGTTTTAGCGTTCTCTCCCTGTTTCTTAAAGGAACGTGTAAGTACTGCCTGGGCAGTCCTGTGTATCGCTACCACTGTCTTTTCAGGTCAAATGCAAGTATGGTTTTATTTTAAATTGCCAAATTGAATCATGGTTGTGAATGGTTATTATCGAGCATGTAACAAGTCCTGTCTGCCTTTTCACTGATGCACTTCATCATGACAATACCAATCAGCTGATGAGAGAACTGAATAAACATTATTTACTGTTTTAAA

Function

symbol description
g3bp1 Enables mRNA 3'-UTR binding activity. Predicted to act upstream of or within innate immune response. Predicted to be located in cytoplasmic stress granule. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol. Is expressed in neuromast. Orthologous to human G3BP1 (G3BP stress granule assembly factor 1).

NR:

description
ras GTPase-activating protein-binding protein 1-like isoform X1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17265 G3BP1; Ras GTPase-activating protein-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583300.2 False 2175 mRNA 0.54 12 8616964 8625548
XM_021583301.2 False 2441 mRNA 0.52 12 8616964 8626099
XM_036970114.1 False 2088 mRNA 0.54 12 8616964 8626178
XM_021583299.2 True 2434 mRNA 0.51 12 8616964 8627201

Neighbor

gene id symbol gene type direction distance location
LOC110504517 LOC106604175 coding downstream 352726 8249532 ~ 8264238 (-)
LOC110504516 LOC106612282 coding downstream 392412 8173221 ~ 8224552 (-)
LOC110504508 LOC106612286 coding downstream 512219 8091034 ~ 8104745 (-)
LOC110504485 tgfbi coding downstream 690205 7896711 ~ 7926759 (-)
LOC110504484 smad5 coding downstream 724786 7871894 ~ 7892178 (-)
sparc sparc coding upstream 10387 8637588 ~ 8656945 (-)
LOC110504555 atox1 coding upstream 51550 8678751 ~ 8681239 (-)
mtnr1al LOC106612252 coding upstream 123135 8750336 ~ 8755486 (-)
LOC118945975 NA coding upstream 151736 8778937 ~ 8780302 (-)
LOC110504535 fat2 coding upstream 153299 8780500 ~ 8859214 (-)
G2249161 NA non-coding downstream 39851 8576783 ~ 8577113 (-)
G2249144 NA non-coding downstream 77703 8537647 ~ 8539261 (-)
G2248886 NA non-coding downstream 127854 8488893 ~ 8489110 (-)
G2248865 NA non-coding downstream 149538 8462413 ~ 8467426 (-)
G2248864 NA non-coding downstream 155040 8461484 ~ 8461924 (-)
G2249199 NA non-coding upstream 32425 8659626 ~ 8659886 (-)
G2249201 NA non-coding upstream 36753 8663954 ~ 8664177 (-)
G2249234 LOC107687231 non-coding upstream 101313 8728514 ~ 8729135 (-)
G2249241 NA non-coding upstream 115864 8743065 ~ 8745726 (-)
G2248668 LOC106612284 other downstream 459431 8153911 ~ 8157963 (-)
G2248522 NA other downstream 575484 8040876 ~ 8041480 (-)
G2247813 NA other downstream 1361024 7255344 ~ 7255940 (-)
G2247565 NA other downstream 1592425 6938623 ~ 7024539 (-)
G2247416 NA other downstream 1745864 6870587 ~ 6871100 (-)
c1qtnf2 c1qtnf2 other upstream 519590 9145591 ~ 9148916 (-)
G2249506 NA other upstream 522687 9149888 ~ 9150141 (-)
G2250247 NA other upstream 1325116 9952317 ~ 9952703 (-)
G2250775 NA other upstream 1898590 10525791 ~ 10526568 (-)
G2251534 NA other upstream 2069991 10697192 ~ 10698407 (-)

Expression


Co-expression Network