LOC118946015


Basic Information

Item Value
gene id LOC118946015
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 8918493 ~ 8920227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041147.1
GAAACACCCACAAGCCTAAATTTTGCGTAACAGGATGAGCAATCCACTGATCTACACCCTGTTTCCCCTTCTAGAACGTGGGTCGGTTCAGTTTGTTTTAAGAtcagtgttttttatttttttaaagagaaCCGCCCAACTGGTCGAGTTGAGTGAGTTGTTGTGAGTGAGAGTGAGCAGCACCGACCTCTTGAGAGACCATACCACAGCCCGGCGAGGCGCAGTGTTCAGAAGAGTTGGTAACTCTAGACAAGGACTGGTAGGGTTGACGAGAGGACGCAGGGCAGGCATGGGTTGCAGCCACAGCAAGAAATAAGTACTTAAAGAGGTACTGCAAACCAAGCCACTGGCGAGCTGTATAGCAGCGTCTGCAGAGCAGATCACAAAACCATCTGTTTGGCTGGTTGACGTAGGCAACTGGAGAAGTGTGAAGGTCTGCTAGAGAGGGCTCTACAAGAGAAGCctgaagagagacacacacacacacagcaatatgGGTCTCCATACGGCCCATGATGAAAATGCCACATGAAGAGACTCCTCCTCAGCCAAGTGTTAATGGCATATCACGGAACATGTGTTTCTCTGCTTGAAAGACTCAACCACAGTCTAAATTAAATGTCCTTTAACTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041147.1 True 633 mRNA 0.48 2 8918493 8920227
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118946014 NA coding upstream 1046 8912720 ~ 8917447 (+)
LOC118946016 NA coding upstream 11534 8903750 ~ 8906959 (+)
LOC110504544 LOC106612256 coding upstream 173823 8681832 ~ 8744670 (+)
LOC110504553 sparc coding upstream 317068 8501505 ~ 8656996 (+)
LOC118945996 NA coding upstream 700869 8193346 ~ 8217624 (+)
LOC110504529 pp2aa coding downstream 291590 9211817 ~ 9221226 (+)
LOC110504533 sfxn1 coding downstream 303805 9224032 ~ 9248966 (+)
nudcd2 nudcd2 coding downstream 628160 9548387 ~ 9552601 (+)
gdf9 LOC106612229 coding downstream 664019 9584246 ~ 9590828 (+)
LOC110504554 LOC106604229 coding downstream 679851 9600078 ~ 9602977 (+)
G2249100 NA non-coding upstream 27403 8890755 ~ 8891090 (+)
G2249055 LOC106604189 non-coding upstream 82565 8833348 ~ 8835928 (+)
G2249042 NA non-coding upstream 114166 8803920 ~ 8804327 (+)
G2249027 fat2 non-coding upstream 134297 8778935 ~ 8784196 (+)
G2249024 NA non-coding upstream 146169 8772088 ~ 8772324 (+)
G2249110 NA non-coding downstream 7706 8927933 ~ 8946957 (+)
G2249113 NA non-coding downstream 11661 8931888 ~ 8932558 (+)
G2249341 NA non-coding downstream 37886 8958113 ~ 8958542 (+)
G2249347 NA non-coding downstream 44002 8964229 ~ 8964811 (+)
G2249372 NA non-coding downstream 88347 9008574 ~ 9009236 (+)
G2249058 NA other upstream 84118 8831981 ~ 8834375 (+)
G2247754 NA other upstream 1681564 7236526 ~ 7236929 (+)
G2247747 NA other upstream 1693647 7224214 ~ 7224846 (+)
G2247687 NA other upstream 1783235 7132731 ~ 7135258 (+)
G2247557 NA other upstream 1844425 7071959 ~ 7074068 (+)
G2249418 LOC106612241 other downstream 186481 9106708 ~ 9111322 (+)
G2249775 NA other downstream 561453 9481680 ~ 9557467 (+)
G2249785 LOC106604237 other downstream 566018 9486245 ~ 9486922 (+)
G2250462 NA other downstream 1308693 10228920 ~ 10229999 (+)

Expression

LOC118946015 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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LOC118946015 Expression in each Bioproject

Bar chart with 19 bars.
LOC118946015 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network