LOC110504523 (LOC106612238)


Basic Information

Item Value
gene id LOC110504523
gene name LOC106612238
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 9080162 ~ 9085964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970528.1
GAGCAATATCATAGGCGGACCTTATAAATTCAGGTGTTGATATTTTCTTGTGTAGAAGCTCTTTAGCGAAATAACTAATTATTTCAATGTAACTTTCGTATGGTAGTGTGTGAAACACAGTTAATTATTGAAACAAATTATATTTGTATAGTTTGTTGCTAGACTTTTTTGTTTCCCGAAATCCACGTGTCTCACCACAGAACAATCTTAGTCTCATTGTGCAGTAGGACATGGATAGGAACAACATTTCCTTGCTCTGCTATGTTGCAACGTGTACACCCGGGGCGTCGTCATTACGCCGATTCTGTTgtaaaacgtttcttaaacagaatGAAACGAGGCGGGACCAACCgtaatttgtccaatagaaactctcgttttagTTGCTAAACGTTctgcaactgtttggactaatgattacacccctgcTAGGTAGCTATCAGCGAGCAGCAGTGTTGCTCTGTTATTAGCCAGCGTCAAGCCAAAGCTTTGCCAATGTAATAAGAACATTGGCACGGCATTTCACTTTCAGTAACCAAAGGCGTAATGTGATATTTCGAGGAAGAATATGACAAGAACACCAGTTGGACAGCAAAATAATCCGACTGCAAAGGAGAGAGCCAGGAATAATGAAGATGTTCGATTGTAGAATCACGACGACATTCTCTGTTTTATGAGGAGCTACTGTCAGAATCTGGGGAATAGCATAACTGGATTTTTCTGTGAAATCTTGAAGCTGTTGTCATTTGCAACCTCGAAAATGATGTATTCATCAAGAAGGAAACCAGTCCTCTATTTCAAAGAAGACCGAAGATTCTGGTCTGGGAAATGCACAGTCTACAAACTATTTGGTCTGTGTGTGGTGCTGGTACTGGTCTCCCTCCTATGGCTCCAACTCAGCTGTACAGGAGACATGACCCGGGTTGTAGTGGATGACGGACGCATCCCCCATCAGCCTTGTCCGCTGGAGAGACAGGCATCCGCTGCGGACGACCCTTCCTGGGGTCCTCACAAGCTGGCCCTCCTGATACCTTTCAGGGAGAGGTTTGAGGAGCTGCTGGTATTTGTCCCCTTCATGCACACCTTCTTGAACAACAAGAAAATACTGCATAAGATCTTTGTAATTAACCAGATGGATCACTATCGGTTCAACAGAGCCTCTCTCATTAACGTTGGTTACACGGAGAGTGGTAACGACACTGATTACATCGCCATGCATGATGTGGACTTGTTACCTCTGAATGAAGCTCTGGACTATGGTTTCCCAGAGGAGGGCCCGTTCCACGTGGCCTCACCAGAGCTGCACCCCCTGTATCACTACAAGACATACGTGGGAGGAATCCTGCTGCTCACCAAACAGCATTATCACATGTGCAACGGCATGTCCAACCGGTtctggggatgggggagagaagacGATGAATTCTACAGGAGACTAAGAACTGCTGGATTACAGCTCTTCAGGCCCAGTGGGATAAAAACAGGGTATAAAACCTTTCGCCACATCCATGACCCTGCCTGGAGGAAGAGAGACCAGAAGAGAATGGCTGCACAGAAACAGAAGGAACAATTCAAGGTTGACCCTGAGGGCGGGTTGACTAACTTGCAGTACAAGGTGGAGTCGAGACAGGAGCTGACTATTAGTGGAGCCCCTGTCACTGTCCTCAACACCAAACTggagtgtgacacagacaagacTCCCTGGTGTCTGCTGAACTAATAGGACCCCAATGATAGACCCATGCTGCCTCTCACCTGGGTTATGTTCATTATCCACCAAATGGAATAAAACAGGGTGGGACTACCTGAGCttctccaataagaaacacttgtttttgtgtgccctaatgaatgtGACCCTGGTGCTACAGAGGGGTGATGTTTCCCCTGCTTGAAGTGTCTGGAAGACATGGATAAAATTAAAAAAAgtagattattattttatttttttctcaaaAAAACGCATCAGAAGACATCTTTTGGCTGACCCAGAGAAGAGGCTTTGGCCTTTGACCCCAGCAACGCCTTCCCGCATTGGAGAGATGGAATGTATTTATATTGAACTAGCTATATGATGTCATCCTTTAGAACTGTATGTCTAACTTGCATTCAGAACTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCCGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCCGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCCGTGAGTGACTGGATCCGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCCGTGAGTGACTGGATCCGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCCGTGAGTGACTGGATCTGTGAGTGACTGGATCTCATGCAGGCCTAACTTCAGGGGCTTTGAACTACAGACACTTTGCCAATATTGACGATACATGAAAGGAAAGGTGTTCTGAAATAATAAGCAATGGCCTTTgta
>XM_036970529.1
GAGCAATATCATAGGCGGACCTTATAAATTCAGGTGTTGATATTTTCTTGTGTAGAAGCTCTTTAGCGAAATAACTAATTATTTCAATGTAACTTTCGTATGGTAGTGTGTGAAACACAGTTAATTATTGAAACAAATTATATTTGTATAGTTTGTTGCTAGACTTTTTTGTTTCCCGAAATCCACGTGTCTCACCACAGAACAATCTTAGTCTCATTGTGCAGTAGGACATGGATAGGAACAACATTTCCTTGCTCTGCTATGTTGCAACGTGTACACCCGGGGCGTCGTCATTACGCCGATTCTGTTgtaaaacgtttcttaaacagaatGAAACGAGGCGGGACCAACCgtaatttgtccaatagaaactctcgttttagTTGCTAAACGTTctgcaactgtttggactaatgattacacccctgcTAGGTAGCTATCAGCGAGCAGCAGTGTTGCTCTGTTATTAGCCAGCGTCAAGCCAAAGCTTTGCCAATGTAATAAGAACATTGGCACGGCATTTCACTTTCAGTAACCAAAGGCGTAATGTGATATTTCGAGGAAGAATATGACAAGAACACCAGTTGGACAGCAAAATAATCCGACTGCAAAGGAGAGAGCCAGGAATAATGAAGATGTTCGATTGTAGAATCACGACGACATTCTCTGTTTTATGAGGAGCTACTGTCAGAATCTGGGGAATAGCATAACTGGATTTTTCTGTGAAATCTTGAAGCTGTTGTCATTTGCAACCTCGAAAATGATGTATTCATCAAGAAGGAAACCAGTCCTCTATTTCAAAGAAGACCGAAGATTCTGGTCTGGGAAATGCACAGTCTACAAACTATTTGGTCTGTGTGTGGTGCTGGTACTGGTCTCCCTCCTATGGCTCCAACTCAGCTGTACAGGAGACATGACCCGGGTTGTAGTGGATGACGGACGCATCCCCCATCAGCCTTGTCCGCTGGAGAGACAGGCATCCGCTGCGGACGACCCTTCCTGGGGTCCTCACAAGCTGGCCCTCCTGATACCTTTCAGGGAGAGGTTTGAGGAGCTGCTGGTATTTGTCCCCTTCATGCACACCTTCTTGAACAACAAGAAAATACTGCATAAGATCTTTGTAATTAACCAGATGGATCACTATCGGTTCAACAGAGCCTCTCTCATTAACGTTGGTTACACGGAGAGTGGTAACGACACTGATTACATCGCCATGCATGATGTGGACTTGTTACCTCTGAATGAAGCTCTGGACTATGGTTTCCCAGAGGAGGGCCCGTTCCACGTGGCCTCACCAGAGCTGCACCCCCTGTATCACTACAAGACATACGTGGGAGGAATCCTGCTGCTCACCAAACAGCATTATCACATGTGCAACGGCATGTCCAACCGGTtctggggatgggggagagaagacGATGAATTCTACAGGAGACTAAGAACTGCTGGATTACAGCTCTTCAGGCCCAGTGGGATAAAAACAGGGTATAAAACCTTTCGCCACATCCATGACCCTGCCTGGAGGAAGAGAGACCAGAAGAGAATGGCTGCACAGAAACAGGAACAATTCAAGGTTGACCCTGAGGGCGGGTTGACTAACTTGCAGTACAAGGTGGAGTCGAGACAGGAGCTGACTATTAGTGGAGCCCCTGTCACTGTCCTCAACACCAAACTggagtgtgacacagacaagacTCCCTGGTGTCTGCTGAACTAATAGGACCCCAATGATAGACCCATGCTGCCTCTCACCTGGGTTATGTTCATTATCCACCAAATGGAATAAAACAGGGTGGGACTACCTGAGCttctccaataagaaacacttgtttttgtgtgccctaatgaatgtGACCCTGGTGCTACAGAGGGGTGATGTTTCCCCTGCTTGAAGTGTCTGGAAGACATGGATAAAATTAAAAAAAgtagattattattttatttttttctcaaaAAAACGCATCAGAAGACATCTTTTGGCTGACCCAGAGAAGAGGCTTTGGCCTTTGACCCCAGCAACGCCTTCCCGCATTGGAGAGATGGAATGTATTTATATTGAACTAGCTATATGATGTCATCCTTTAGAACTGTATGTCTAACTTGCATTCAGAACTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCCGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCCGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCCGTGAGTGACTGGATCCGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCCGTGAGTGACTGGATCCGTGAGTGACTGGATCTGTGAGTGACTGGATCTGTGAGTGACTGGATCCGTGAGTGACTGGATCTGTGAGTGACTGGATCTCATGCAGGCCTAACTTCAGGGGCTTTGAACTACAGACACTTTGCCAATATTGACGATACATGAAAGGAAAGGTGTTCTGAAATAATAAGCAATGGCCTTTgta

Function

NR:

description
beta-1,4-galactosyltransferase 7-like isoform X1

GO: NA

KEGG:

id description
K00733 B4GALT7; xylosylprotein 4-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970528.1 False 2684 mRNA 0.46 6 9080162 9085964
XM_036970529.1 True 2681 mRNA 0.46 6 9080162 9085964

Neighbor

gene id symbol gene type direction distance location
LOC110504521 LOC106612236 coding downstream 9048 9049820 ~ 9071114 (-)
LOC110504535 fat2 coding downstream 220948 8780500 ~ 8859214 (-)
LOC118945975 NA coding downstream 299860 8778937 ~ 8780302 (-)
mtnr1al LOC106612252 coding downstream 324676 8750336 ~ 8755486 (-)
LOC110504555 atox1 coding downstream 398923 8678751 ~ 8681239 (-)
LOC110504525 tmed9 coding upstream 142 9086106 ~ 9090212 (-)
LOC110504524 LOC106612240 coding upstream 4541 9090505 ~ 9100911 (-)
LOC110504527 LOC106612241 coding upstream 20726 9106690 ~ 9145483 (-)
c1qtnf2 c1qtnf2 coding upstream 59627 9145591 ~ 9148916 (-)
LOC110504362 LOC106604211 coding upstream 67268 9153232 ~ 9197578 (-)
G2249442 NA non-coding downstream 69078 9010640 ~ 9011084 (-)
G2249352 NA non-coding downstream 107331 8969456 ~ 8972831 (-)
G2249348 NA non-coding downstream 115722 8964228 ~ 8964440 (-)
G2249345 NA non-coding downstream 117694 8962213 ~ 8962468 (-)
G2249332 NA non-coding downstream 134118 8945103 ~ 8946044 (-)
G2249486 NA non-coding upstream 16925 9102889 ~ 9103156 (-)
G2249494 NA non-coding upstream 44951 9130915 ~ 9131151 (-)
G2249497 NA non-coding upstream 48320 9134284 ~ 9134550 (-)
G2249507 NA non-coding upstream 64377 9150341 ~ 9151226 (-)
G2249508 NA non-coding upstream 65384 9151348 ~ 9151557 (-)
G2248668 LOC106612284 other downstream 922629 8153911 ~ 8157963 (-)
G2248522 NA other downstream 1038682 8040876 ~ 8041480 (-)
G2247813 NA other downstream 1824222 7255344 ~ 7255940 (-)
G2247565 NA other downstream 2055623 6938623 ~ 7024539 (-)
G2247416 NA other downstream 2209062 6870587 ~ 6871100 (-)
G2249506 NA other upstream 63924 9149888 ~ 9150141 (-)
G2250247 NA other upstream 866353 9952317 ~ 9952703 (-)
G2250775 NA other upstream 1439827 10525791 ~ 10526568 (-)
G2251534 NA other upstream 1611228 10697192 ~ 10698407 (-)

Expression


Co-expression Network