Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110504533 |
| gene name | sfxn1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050571.1 |
| NCBI id | CM025858.1 |
| chromosome length | 44108611 |
| location | 9224032 ~ 9248966 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| sfxn1 | Predicted to enable serine transmembrane transporter activity. Predicted to be involved in serine import into mitochondrion. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Is expressed in nervous system; pronephric duct; and yolk syncytial layer. Orthologous to human SFXN1 (sideroflexin 1). |
| description |
|---|
| PREDICTED: sideroflexin-1 isoform X5 |
| id | description |
|---|---|
| K23500 | SFXN1_3; sideroflexin-1/3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036969896.1 | False | 1336 | mRNA | 0.52 | 11 | 9224032 | 9248963 |
| XM_036969898.1 | False | 1134 | mRNA | 0.52 | 10 | 9224067 | 9248966 |
| XM_036969897.1 | False | 1495 | mRNA | 0.51 | 11 | 9224292 | 9248965 |
| XM_036969895.1 | True | 1515 | mRNA | 0.51 | 11 | 9224293 | 9248965 |
9,200,000
9,204,000
9,208,000
9,212,000
9,216,000
9,220,000
9,224,000
9,228,000
9,232,000
9,236,000
9,240,000
9,244,000
9,248,000
9,252,000
NC_050571.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110504529 | pp2aa | coding | upstream | 2806 | 9211817 ~ 9221226 (+) |
| LOC110504364 | ccdc69 | coding | upstream | 286382 | 8901765 ~ 8937650 (+) |
| LOC118946015 | NA | coding | upstream | 303805 | 8918493 ~ 8920227 (+) |
| LOC118946014 | NA | coding | upstream | 306585 | 8912720 ~ 8917447 (+) |
| LOC118946016 | NA | coding | upstream | 317073 | 8903750 ~ 8906959 (+) |
| nudcd2 | nudcd2 | coding | downstream | 299421 | 9548387 ~ 9552601 (+) |
| gdf9 | LOC106612229 | coding | downstream | 335280 | 9584246 ~ 9590828 (+) |
| LOC110504554 | LOC106604229 | coding | downstream | 351112 | 9600078 ~ 9602977 (+) |
| LOC110504537 | LOC100380717 | coding | downstream | 354853 | 9603819 ~ 9617333 (+) |
| LOC110504547 | LOC106612224 | coding | downstream | 368466 | 9617432 ~ 9622394 (+) |
| G2249547 | NA | non-coding | upstream | 21423 | 9202371 ~ 9202609 (+) |
| G2249544 | NA | non-coding | upstream | 23335 | 9200240 ~ 9200697 (+) |
| G2249513 | NA | non-coding | upstream | 60766 | 9160094 ~ 9163266 (+) |
| G2249512 | NA | non-coding | upstream | 67046 | 9156621 ~ 9156986 (+) |
| G2249504 | NA | non-coding | upstream | 73758 | 9149428 ~ 9150274 (+) |
| G2249566 | NA | non-coding | downstream | 9211 | 9258177 ~ 9262805 (+) |
| G2249590 | NA | non-coding | downstream | 70360 | 9319326 ~ 9319637 (+) |
| G2249688 | NA | non-coding | downstream | 93753 | 9342719 ~ 9342947 (+) |
| G2249698 | NA | non-coding | downstream | 100563 | 9349529 ~ 9349951 (+) |
| G2249725 | NA | non-coding | downstream | 133981 | 9382947 ~ 9383243 (+) |
| G2249418 | LOC106612241 | other | upstream | 112710 | 9106708 ~ 9111322 (+) |
| G2249058 | NA | other | upstream | 389657 | 8831981 ~ 8834375 (+) |
| G2247754 | NA | other | upstream | 1987103 | 7236526 ~ 7236929 (+) |
| G2247747 | NA | other | upstream | 1999186 | 7224214 ~ 7224846 (+) |
| G2247687 | NA | other | upstream | 2088774 | 7132731 ~ 7135258 (+) |
| G2249775 | NA | other | downstream | 232714 | 9481680 ~ 9557467 (+) |
| G2249785 | LOC106604237 | other | downstream | 237279 | 9486245 ~ 9486922 (+) |
| G2250462 | NA | other | downstream | 979954 | 10228920 ~ 10229999 (+) |
| G2251174 | NA | other | downstream | 1947634 | 11196600 ~ 11199436 (+) |
